diff --git a/.waf-tools/default-compiler-flags.py b/.waf-tools/default-compiler-flags.py
index f1d23d6..bba2b1e 100644
--- a/.waf-tools/default-compiler-flags.py
+++ b/.waf-tools/default-compiler-flags.py
@@ -17,15 +17,15 @@
         if ccver < (4, 8, 2):
             errmsg = ('The version of gcc you are using is too old.\n'
                       'The minimum supported gcc version is 4.8.2.')
-        flags = GccFlags()
+        conf.flags = GccFlags()
     elif cxx == 'clang':
         if ccver < (3, 4, 0):
             errmsg = ('The version of clang you are using is too old.\n'
                       'The minimum supported clang version is 3.4.0.')
-        flags = ClangFlags()
+        conf.flags = ClangFlags()
     else:
         warnmsg = 'Note: %s compiler is unsupported' % cxx
-        flags = CompilerFlags()
+        conf.flags = CompilerFlags()
 
     if errmsg:
         conf.end_msg('.'.join(conf.env['CC_VERSION']), color='RED')
@@ -36,29 +36,31 @@
     else:
         conf.end_msg('.'.join(conf.env['CC_VERSION']))
 
-    areCustomCxxflagsPresent = (len(conf.env.CXXFLAGS) > 0)
+    conf.areCustomCxxflagsPresent = (len(conf.env.CXXFLAGS) > 0)
 
     # General flags are always applied (e.g., selecting C++11 mode)
-    generalFlags = flags.getGeneralFlags(conf)
+    generalFlags = conf.flags.getGeneralFlags(conf)
     conf.add_supported_cxxflags(generalFlags['CXXFLAGS'])
     conf.add_supported_linkflags(generalFlags['LINKFLAGS'])
     conf.env.DEFINES += generalFlags['DEFINES']
 
+@Configure.conf
+def check_compiler_flags(conf):
     # Debug or optimized CXXFLAGS and LINKFLAGS are applied only if the
     # corresponding environment variables are not set.
     # DEFINES are always applied.
     if conf.options.debug:
-        extraFlags = flags.getDebugFlags(conf)
-        if areCustomCxxflagsPresent:
+        extraFlags = conf.flags.getDebugFlags(conf)
+        if conf.areCustomCxxflagsPresent:
             missingFlags = [x for x in extraFlags['CXXFLAGS'] if x not in conf.env.CXXFLAGS]
             if len(missingFlags) > 0:
                 Logs.warn("Selected debug mode, but CXXFLAGS is set to a custom value '%s'"
                           % " ".join(conf.env.CXXFLAGS))
                 Logs.warn("Default flags '%s' are not activated" % " ".join(missingFlags))
     else:
-        extraFlags = flags.getOptimizedFlags(conf)
+        extraFlags = conf.flags.getOptimizedFlags(conf)
 
-    if not areCustomCxxflagsPresent:
+    if not conf.areCustomCxxflagsPresent:
         conf.add_supported_cxxflags(extraFlags['CXXFLAGS'])
         conf.add_supported_linkflags(extraFlags['LINKFLAGS'])
 
@@ -75,9 +77,10 @@
     self.start_msg('Checking supported CXXFLAGS')
 
     supportedFlags = []
-    for flag in cxxflags:
-        if self.check_cxx(cxxflags=['-Werror', flag], mandatory=False):
-            supportedFlags += [flag]
+    for flags in cxxflags:
+        flags = Utils.to_list(flags)
+        if self.check_cxx(cxxflags=['-Werror'] + flags, mandatory=False):
+            supportedFlags += flags
 
     self.end_msg(' '.join(supportedFlags))
     self.env.prepend_value('CXXFLAGS', supportedFlags)
@@ -93,9 +96,10 @@
     self.start_msg('Checking supported LINKFLAGS')
 
     supportedFlags = []
-    for flag in linkflags:
-        if self.check_cxx(linkflags=['-Werror', flag], mandatory=False):
-            supportedFlags += [flag]
+    for flags in linkflags:
+        flags = Utils.to_list(flags)
+        if self.check_cxx(linkflags=['-Werror'] + flags, mandatory=False):
+            supportedFlags += flags
 
     self.end_msg(' '.join(supportedFlags))
     self.env.prepend_value('LINKFLAGS', supportedFlags)
@@ -173,25 +177,36 @@
 class ClangFlags(GccBasicFlags):
     def getGeneralFlags(self, conf):
         flags = super(ClangFlags, self).getGeneralFlags(conf)
-        if Utils.unversioned_sys_platform() == 'darwin':
-            flags['CXXFLAGS'] += ['-stdlib=libc++']
-            flags['LINKFLAGS'] += ['-stdlib=libc++']
+        version = tuple(int(i) for i in conf.env['CC_VERSION'])
+        if Utils.unversioned_sys_platform() == 'darwin' and version >= (9, 0, 0): # Bug #4296
+            flags['CXXFLAGS'] += [['-isystem', '/usr/local/include'], # for Homebrew
+                                  ['-isystem', '/opt/local/include']] # for MacPorts
         return flags
 
     def getDebugFlags(self, conf):
         flags = super(ClangFlags, self).getDebugFlags(conf)
         flags['CXXFLAGS'] += ['-fcolor-diagnostics',
+                              '-Wextra-semi',
+                              '-Wundefined-func-template',
                               '-Wno-error=deprecated-register',
                               '-Wno-error=infinite-recursion', # Bug #3358
                               '-Wno-error=keyword-macro', # Bug #3235
                               '-Wno-error=unneeded-internal-declaration', # Bug #1588
                               '-Wno-unused-local-typedef', # Bugs #2657 and #3209
                               ]
+        version = tuple(int(i) for i in conf.env['CC_VERSION'])
+        if version < (3, 9, 0) or (Utils.unversioned_sys_platform() == 'darwin' and version < (8, 1, 0)):
+            flags['CXXFLAGS'] += ['-Wno-unknown-pragmas']
         return flags
 
     def getOptimizedFlags(self, conf):
         flags = super(ClangFlags, self).getOptimizedFlags(conf)
         flags['CXXFLAGS'] += ['-fcolor-diagnostics',
+                              '-Wextra-semi',
+                              '-Wundefined-func-template',
                               '-Wno-unused-local-typedef', # Bugs #2657 and #3209
                               ]
+        version = tuple(int(i) for i in conf.env['CC_VERSION'])
+        if version < (3, 9, 0) or (Utils.unversioned_sys_platform() == 'darwin' and version < (8, 1, 0)):
+            flags['CXXFLAGS'] += ['-Wno-unknown-pragmas']
         return flags
diff --git a/src/handles/read-handle.cpp b/src/handles/read-handle.cpp
index 897fab1..b880bdd 100644
--- a/src/handles/read-handle.cpp
+++ b/src/handles/read-handle.cpp
@@ -1,6 +1,6 @@
 /* -*- Mode:C++; c-file-style:"gnu"; indent-tabs-mode:nil; -*- */
-/**
- * Copyright (c) 2014-2017,  Regents of the University of California.
+/*
+ * Copyright (c) 2014-2018, Regents of the University of California.
  *
  * This file is part of NDN repo-ng (Next generation of NDN repository).
  * See AUTHORS.md for complete list of repo-ng authors and contributors.
@@ -27,6 +27,7 @@
   : BaseHandle(face, storageHandle, keyChain, scheduler)
   , m_prefixSubsetLength(prefixSubsetLength)
 {
+  connectAutoListen();
 }
 
 void
diff --git a/src/handles/read-handle.hpp b/src/handles/read-handle.hpp
index a2bbd86..8ec67a2 100644
--- a/src/handles/read-handle.hpp
+++ b/src/handles/read-handle.hpp
@@ -1,6 +1,6 @@
 /* -*- Mode:C++; c-file-style:"gnu"; indent-tabs-mode:nil; -*- */
-/**
- * Copyright (c) 2014-2017,  Regents of the University of California.
+/*
+ * Copyright (c) 2014-2018, Regents of the University of California.
  *
  * This file is part of NDN repo-ng (Next generation of NDN repository).
  * See AUTHORS.md for complete list of repo-ng authors and contributors.
@@ -43,9 +43,6 @@
   void
   listen(const Name& prefix) override;
 
-  void
-  connectAutoListen();
-
 PUBLIC_WITH_TESTS_ELSE_PRIVATE:
   const std::map<ndn::Name, RegisteredDataPrefix>&
   getRegisteredPrefixes()
@@ -65,6 +62,9 @@
   void
   onDataInserted(const Name& name);
 
+  void
+  connectAutoListen();
+
 private:
   /**
    * @brief Read data from backend storage
diff --git a/src/storage/repo-storage.cpp b/src/storage/repo-storage.cpp
index d3834ba..148116b 100644
--- a/src/storage/repo-storage.cpp
+++ b/src/storage/repo-storage.cpp
@@ -1,6 +1,6 @@
 /* -*- Mode:C++; c-file-style:"gnu"; indent-tabs-mode:nil; -*- */
 /*
- * Copyright (c) 2014-2017, Regents of the University of California.
+ * Copyright (c) 2014-2018, Regents of the University of California.
  *
  * This file is part of NDN repo-ng (Next generation of NDN repository).
  * See AUTHORS.md for complete list of repo-ng authors and contributors.
@@ -22,13 +22,11 @@
 
 #include <istream>
 
+#include <ndn-cxx/util/logger.hpp>
+
 namespace repo {
 
-static void
-insertItemToIndex(Index* index, const Storage::ItemMeta& item)
-{
-  index->insert(item.fullName, item.id, item.keyLocatorHash);
-}
+NDN_LOG_INIT(repo.RepoStorage);
 
 RepoStorage::RepoStorage(const int64_t& nMaxPackets, Storage& store)
   : m_index(nMaxPackets)
@@ -39,7 +37,16 @@
 void
 RepoStorage::initialize()
 {
-  m_storage.fullEnumerate(bind(&insertItemToIndex, &m_index, _1));
+  NDN_LOG_DEBUG("Initialize");
+  m_storage.fullEnumerate(bind(&RepoStorage::insertItemToIndex, this, _1));
+}
+
+void
+RepoStorage::insertItemToIndex(const Storage::ItemMeta& item)
+{
+  NDN_LOG_DEBUG("Insert data to index " << item.fullName);
+  m_index.insert(item.fullName, item.id, item.keyLocatorHash);
+  afterDataInsertion(item.fullName);
 }
 
 bool
diff --git a/src/storage/repo-storage.hpp b/src/storage/repo-storage.hpp
index bf3ade8..ec5faa7 100644
--- a/src/storage/repo-storage.hpp
+++ b/src/storage/repo-storage.hpp
@@ -1,6 +1,6 @@
 /* -*- Mode:C++; c-file-style:"gnu"; indent-tabs-mode:nil; -*- */
-/**
- * Copyright (c) 2014-2017,  Regents of the University of California.
+/*
+ * Copyright (c) 2014-2018, Regents of the University of California.
  *
  * This file is part of NDN repo-ng (Next generation of NDN repository).
  * See AUTHORS.md for complete list of repo-ng authors and contributors.
@@ -90,6 +90,10 @@
   std::shared_ptr<Data>
   readData(const Interest& interest) const;
 
+private:
+  void
+  insertItemToIndex(const Storage::ItemMeta& item);
+
 public:
   ndn::util::Signal<RepoStorage, ndn::Name> afterDataInsertion;
   ndn::util::Signal<RepoStorage, ndn::Name> afterDataDeletion;
diff --git a/wscript b/wscript
index fc3de3b..ed3e3c4 100644
--- a/wscript
+++ b/wscript
@@ -34,12 +34,11 @@
     conf.env['WITH_TESTS'] = conf.options.with_tests
     conf.env['WITH_TOOLS'] = conf.options.with_tools
 
-    USED_BOOST_LIBS = ['system', 'iostreams', 'filesystem']
+    USED_BOOST_LIBS = ['system', 'iostreams', 'filesystem', 'thread', 'log', 'log_setup']
     if conf.env['WITH_TESTS']:
         conf.define('HAVE_TESTS', 1)
         USED_BOOST_LIBS += ['unit_test_framework']
-
-    conf.check_boost(lib=USED_BOOST_LIBS, mandatory=True)
+    conf.check_boost(lib=USED_BOOST_LIBS, mandatory=True, mt=True)
 
     try:
         conf.load("doxygen")