First step of refactoring code (ccnx prefix => ndn prefix)
diff --git a/apps/ndn-consumer.cc b/apps/ndn-consumer.cc
new file mode 100644
index 0000000..6d976fc
--- /dev/null
+++ b/apps/ndn-consumer.cc
@@ -0,0 +1,338 @@
+/* -*-  Mode: C++; c-file-style: "gnu"; indent-tabs-mode:nil; -*- */
+/*
+ * Copyright (c) 2011 University of California, Los Angeles
+ *
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License version 2 as
+ * published by the Free Software Foundation;
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
+ *
+ * Author: Ilya Moiseenko <iliamo@cs.ucla.edu>
+ */
+
+#include "ndn-consumer.h"
+#include "ns3/ptr.h"
+#include "ns3/log.h"
+#include "ns3/simulator.h"
+#include "ns3/packet.h"
+#include "ns3/callback.h"
+#include "ns3/string.h"
+#include "ns3/boolean.h"
+#include "ns3/uinteger.h"
+#include "ns3/double.h"
+
+#include "ns3/ndn.h"
+#include "ns3/ndn-app-face.h"
+#include "ns3/ndn-interest-header.h"
+#include "ns3/ndn-content-object-header.h"
+// #include "ns3/weights-path-stretch-tag.h"
+
+#include <boost/ref.hpp>
+#include <boost/lexical_cast.hpp>
+#include <boost/lambda/lambda.hpp>
+#include <boost/lambda/bind.hpp>
+
+#include "ns3/names.h"
+
+namespace ll = boost::lambda;
+
+NS_LOG_COMPONENT_DEFINE ("NdnConsumer");
+
+namespace ns3
+{    
+    
+NS_OBJECT_ENSURE_REGISTERED (NdnConsumer);
+    
+TypeId
+NdnConsumer::GetTypeId (void)
+{
+  static TypeId tid = TypeId ("ns3::NdnConsumer")
+    .SetGroupName ("Ndn")
+    .SetParent<NdnApp> ()
+    .AddAttribute ("StartSeq", "Initial sequence number",
+                   IntegerValue (0),
+                   MakeIntegerAccessor(&NdnConsumer::m_seq),
+                   MakeIntegerChecker<int32_t>())
+
+    .AddAttribute ("Prefix","NdnName of the Interest",
+                   StringValue ("/"),
+                   MakeNdnNameComponentsAccessor (&NdnConsumer::m_interestName),
+                   MakeNdnNameComponentsChecker ())
+    .AddAttribute ("LifeTime", "LifeTime for interest packet",
+                   StringValue ("2s"),
+                   MakeTimeAccessor (&NdnConsumer::m_interestLifeTime),
+                   MakeTimeChecker ())
+    .AddAttribute ("MinSuffixComponents", "MinSuffixComponents",
+                   IntegerValue(-1),
+                   MakeIntegerAccessor(&NdnConsumer::m_minSuffixComponents),
+                   MakeIntegerChecker<int32_t>())
+    .AddAttribute ("MaxSuffixComponents", "MaxSuffixComponents",
+                   IntegerValue(-1),
+                   MakeIntegerAccessor(&NdnConsumer::m_maxSuffixComponents),
+                   MakeIntegerChecker<int32_t>())
+    .AddAttribute ("ChildSelector", "ChildSelector",
+                   BooleanValue(false),
+                   MakeBooleanAccessor(&NdnConsumer::m_childSelector),
+                   MakeBooleanChecker())
+    .AddAttribute ("Exclude", "only simple name matching is supported (use NdnNameComponents)",
+                   NdnNameComponentsValue (),
+                   MakeNdnNameComponentsAccessor (&NdnConsumer::m_exclude),
+                   MakeNdnNameComponentsChecker ())
+
+    .AddAttribute ("RetxTimer",
+                   "Timeout defining how frequent retransmission timeouts should be checked",
+                   StringValue ("50ms"),
+                   MakeTimeAccessor (&NdnConsumer::GetRetxTimer, &NdnConsumer::SetRetxTimer),
+                   MakeTimeChecker ())
+
+    .AddTraceSource ("PathWeightsTrace", "PathWeightsTrace",
+                    MakeTraceSourceAccessor (&NdnConsumer::m_pathWeightsTrace))
+    ;
+
+  return tid;
+}
+    
+NdnConsumer::NdnConsumer ()
+  : m_rand (0, std::numeric_limits<uint32_t>::max ())
+  , m_seq (0)
+  , m_seqMax (0) // don't request anything
+{
+  NS_LOG_FUNCTION_NOARGS ();
+
+  m_rtt = CreateObject<RttMeanDeviation> ();
+}
+
+void
+NdnConsumer::SetRetxTimer (Time retxTimer)
+{
+  m_retxTimer = retxTimer;
+  if (m_retxEvent.IsRunning ())
+    m_retxEvent.Cancel (); // cancel any scheduled cleanup events
+
+  // schedule even with new timeout
+  m_retxEvent = Simulator::Schedule (m_retxTimer,
+                                     &NdnConsumer::CheckRetxTimeout, this); 
+}
+
+Time
+NdnConsumer::GetRetxTimer () const
+{
+  return m_retxTimer;
+}
+
+void
+NdnConsumer::CheckRetxTimeout ()
+{
+  Time now = Simulator::Now ();
+
+  Time rto = m_rtt->RetransmitTimeout ();
+
+  while (!m_seqTimeouts.empty ())
+    {
+      SeqTimeoutsContainer::index<i_timestamp>::type::iterator entry =
+        m_seqTimeouts.get<i_timestamp> ().begin ();
+      if (entry->time + rto <= now) // timeout expired?
+        {
+          uint32_t seqNo = entry->seq;
+          m_seqTimeouts.get<i_timestamp> ().erase (entry);
+          OnTimeout (seqNo);
+        }
+      else
+        break; // nothing else to do. All later packets need not be retransmitted
+    }
+
+  m_retxEvent = Simulator::Schedule (m_retxTimer,
+                                     &NdnConsumer::CheckRetxTimeout, this); 
+}
+
+// Application Methods
+void 
+NdnConsumer::StartApplication () // Called at time specified by Start
+{
+  NS_LOG_FUNCTION_NOARGS ();
+
+  // do base stuff
+  NdnApp::StartApplication ();
+
+  ScheduleNextPacket ();
+}
+    
+void 
+NdnConsumer::StopApplication () // Called at time specified by Stop
+{
+  NS_LOG_FUNCTION_NOARGS ();
+
+  // cancel periodic packet generation
+  Simulator::Cancel (m_sendEvent);
+
+  // cleanup base stuff
+  NdnApp::StopApplication ();
+}
+    
+void
+NdnConsumer::SendPacket ()
+{
+  if (!m_active) return;
+
+  NS_LOG_FUNCTION_NOARGS ();
+
+  uint32_t seq=std::numeric_limits<uint32_t>::max (); //invalid
+
+  // std::cout << Simulator::Now ().ToDouble (Time::S) << "s max -> " << m_seqMax << "\n";
+  
+  while (m_retxSeqs.size ())
+    {
+      seq = *m_retxSeqs.begin ();
+      m_retxSeqs.erase (m_retxSeqs.begin ());
+
+      // NS_ASSERT (m_seqLifetimes.find (seq) != m_seqLifetimes.end ());
+      // if (m_seqLifetimes.find (seq)->time <= Simulator::Now ())
+      //   {
+          
+      //     NS_LOG_DEBUG ("Expire " << seq);
+      //     m_seqLifetimes.erase (seq); // lifetime expired. Trying to find another unexpired sequence number
+      //     continue;
+      //   }
+      break;
+    }
+
+  if (seq == std::numeric_limits<uint32_t>::max ())
+    {
+      if (m_seqMax != std::numeric_limits<uint32_t>::max ())
+        {
+          if (m_seq >= m_seqMax)
+            {
+              return; // we are totally done
+            }
+        }
+      
+      seq = m_seq++;
+    }
+  
+  // std::cout << Simulator::Now ().ToDouble (Time::S) << "s -> " << seq << "\n";
+  
+  //
+  Ptr<NdnNameComponents> nameWithSequence = Create<NdnNameComponents> (m_interestName);
+  (*nameWithSequence) (seq);
+  //
+
+  NdnInterestHeader interestHeader;
+  interestHeader.SetNonce               (m_rand.GetValue ());
+  interestHeader.SetName                (nameWithSequence);
+  interestHeader.SetInterestLifetime    (m_interestLifeTime);
+  interestHeader.SetChildSelector       (m_childSelector);
+  if (m_exclude.size ()>0)
+    {
+      interestHeader.SetExclude (Create<NdnNameComponents> (m_exclude));
+    }
+  interestHeader.SetMaxSuffixComponents (m_maxSuffixComponents);
+  interestHeader.SetMinSuffixComponents (m_minSuffixComponents);
+        
+  // NS_LOG_INFO ("Requesting Interest: \n" << interestHeader);
+  NS_LOG_INFO ("> Interest for " << seq);
+
+  Ptr<Packet> packet = Create<Packet> ();
+  packet->AddHeader (interestHeader);
+  NS_LOG_DEBUG ("Interest packet size: " << packet->GetSize ());
+
+  m_protocolHandler (packet);
+
+  NS_LOG_DEBUG ("Trying to add " << seq << " with " << Simulator::Now () << ". already " << m_seqTimeouts.size () << " items");  
+  
+  m_seqTimeouts.insert (SeqTimeout (seq, Simulator::Now ()));
+  m_seqLifetimes.insert (SeqTimeout (seq, Simulator::Now () + m_interestLifeTime)); // only one insert will work. if entry exists, nothing will happen... nothing should happen
+  m_transmittedInterests (&interestHeader, this, m_face);
+
+  m_rtt->SentSeq (SequenceNumber32 (seq), 1);
+  ScheduleNextPacket ();
+}
+
+///////////////////////////////////////////////////
+//          Process incoming packets             //
+///////////////////////////////////////////////////
+
+
+void
+NdnConsumer::OnContentObject (const Ptr<const NdnContentObjectHeader> &contentObject,
+                               Ptr<Packet> payload)
+{
+  if (!m_active) return;
+
+  NdnApp::OnContentObject (contentObject, payload); // tracing inside
+  
+  NS_LOG_FUNCTION (this << contentObject << payload);
+
+  // NS_LOG_INFO ("Received content object: " << boost::cref(*contentObject));
+  
+  uint32_t seq = boost::lexical_cast<uint32_t> (contentObject->GetName ().GetComponents ().back ());
+  NS_LOG_INFO ("< DATA for " << seq);
+
+  // SeqTimeoutsContainer::iterator entry = m_seqTimeouts.find (seq);
+
+  //  NS_ASSERT_MSG (entry != m_seqTimeouts.end (),
+  //             "Comment out this assert, if it causes problems");
+
+  // if (entry != m_seqTimeouts.end ())
+  //   m_seqTimeouts.erase (entry);
+
+  m_seqLifetimes.erase (seq);
+  m_seqTimeouts.erase (seq);
+  m_retxSeqs.erase (seq);
+
+  m_rtt->AckSeq (SequenceNumber32 (seq));
+
+  // Ptr<const WeightsPathStretchTag> tag = payload->RemovePacketTag<WeightsPathStretchTag> ();
+  // if (tag != 0)
+  //   {
+  //     // Notify trace about path weights vector (e.g., for path-stretch calculation)
+  //     m_pathWeightsTrace (GetNode (), tag->GetSourceNode (), seq, tag->GetTotalWeight ());
+  //     // if (Names::FindName (GetNode ()) == "36")// || Names::FindName (GetNode ()) == "40"|| Names::FindName (GetNode ()) == "5")
+  //     //   std::cout << Simulator::Now () << "\t" << boost::cref(*tag) << " = " << tag->GetTotalWeight () << "\n";
+  //   }
+}
+
+void
+NdnConsumer::OnNack (const Ptr<const NdnInterestHeader> &interest, Ptr<Packet> origPacket)
+{
+  if (!m_active) return;
+  
+  NdnApp::OnNack (interest, origPacket); // tracing inside
+  
+  NS_LOG_DEBUG ("Nack type: " << interest->GetNack ());
+
+  NS_LOG_FUNCTION (this << interest);
+
+  // NS_LOG_INFO ("Received NACK: " << boost::cref(*interest));
+  uint32_t seq = boost::lexical_cast<uint32_t> (interest->GetName ().GetComponents ().back ());
+  NS_LOG_INFO ("< NACK for " << seq);
+  // std::cout << Simulator::Now ().ToDouble (Time::S) << "s -> " << "NACK for " << seq << "\n"; 
+
+  // put in the queue of interests to be retransmitted
+  NS_LOG_INFO ("Before: " << m_retxSeqs.size ());
+  m_retxSeqs.insert (seq);
+  NS_LOG_INFO ("After: " << m_retxSeqs.size ());
+
+  // m_rtt->IncreaseMultiplier ();             // Double the next RTO ??
+  ScheduleNextPacket ();
+}
+
+void
+NdnConsumer::OnTimeout (uint32_t sequenceNumber)
+{
+  // std::cout << Simulator::Now () << ", TO: " << sequenceNumber << ", current RTO: " << m_rtt->RetransmitTimeout ().ToDouble (Time::S) << "s\n";
+
+  // m_rtt->IncreaseMultiplier ();             // Double the next RTO
+  m_rtt->SentSeq (SequenceNumber32 (sequenceNumber), 1); // make sure to disable RTT calculation for this sample
+  m_retxSeqs.insert (sequenceNumber);
+  ScheduleNextPacket (); 
+}
+
+} // namespace ns3