core: Add Mtree

Change-Id: I80205fb0d1f4ee5bcbc6c73651bb697fe854bf53
diff --git a/tests/core/test-merkle-tree-cache.cpp b/tests/core/test-merkle-tree-cache.cpp
new file mode 100644
index 0000000..12e534a
--- /dev/null
+++ b/tests/core/test-merkle-tree-cache.cpp
@@ -0,0 +1,143 @@
+/* -*- Mode:C++; c-file-style:"gnu"; indent-tabs-mode:nil; -*- */
+/**
+ * Copyright (c) 2014,  Regents of the University of California
+ *
+ * This file is part of NSL (NDN Signature Logger).
+ * See AUTHORS.md for complete list of NSL authors and contributors.
+ *
+ * NSL is free software: you can redistribute it and/or modify it under the terms
+ * of the GNU General Public License as published by the Free Software Foundation,
+ * either version 3 of the License, or (at your option) any later version.
+ *
+ * NSL is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY;
+ * without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE.  See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License along with
+ * NSL, e.g., in COPYING.md file.  If not, see <http://www.gnu.org/licenses/>.
+ *
+ * @author Peizhen Guo <patrick.guopz@gmail.com>
+ */
+#include <boost-test.hpp>
+#include <iostream>
+
+#include "merkle-tree-cache.hpp"
+#include "Auditor.hpp"
+
+
+namespace nsl {
+
+boost::test_tools::predicate_result check_buffer_cache(ndn::ConstBufferPtr ptr1,
+                                                       ndn::ConstBufferPtr ptr2)
+{
+  bool result = true;
+  for (int i = 0; i < ptr1->size(); i++)
+    {
+      if ((*ptr1)[i] != (*ptr2)[i])
+        {
+          result = false;
+          break;
+        }
+    }
+  return result;
+}
+
+BOOST_AUTO_TEST_SUITE(TestCache)
+
+BOOST_AUTO_TEST_CASE(TestFunction)
+{
+  // Test build
+  ndn::Buffer buf[200];
+  Index idx[200];
+  for (uint8_t i = 0; i < 200; i++)
+    {
+      buf[i].push_back(i);
+      idx[i].number = i;
+      idx[i].level = 0;
+    }
+  MerkleTreeCache treeCache;
+  for (int i = 0; i < 200; i++)
+    {
+      ndn::ConstBufferPtr p_buf = ndn::make_shared<ndn::Buffer>(buf[i]);
+      Leaf newleaf(p_buf, idx[i].number, idx[i].level, 0);
+      newleaf.computeHash();
+      treeCache.addLeaf(newleaf);
+      BOOST_CHECK(treeCache.getLeaves() == i + 1);
+    }
+  BOOST_CHECK(treeCache.getLevel() == 2 && treeCache.getLeaves() == 200);
+  // std::cout<<treeCache.m_cachedTree.size()<<' '<<treeCache.m_leavesData.size()<<std::endl;
+
+  // Test query
+  ndn::ConstBufferPtr data_buf90 = ((Leaf*)(treeCache.queryNode(idx[90]).get()))->getData();
+  BOOST_CHECK(int((*data_buf90)[0]) == 90);
+  ndn::ConstBufferPtr data_buf10 = ((Leaf*)(treeCache.queryNode(idx[10]).get()))->getData();
+  BOOST_CHECK(int((*data_buf10)[0]) == 10);
+
+  ndn::ConstBufferPtr hash_buf1 = ((Leaf*)(treeCache.queryNode(idx[0]).get()))->getHash();
+  ndn::ConstBufferPtr hash_buf2 = ((Leaf*)(treeCache.queryNode(idx[1]).get()))->getHash();
+  ndn::ConstBufferPtr hash_buf3 = ((Leaf*)(treeCache.queryNode(idx[2]).get()))->getHash();
+  ndn::ConstBufferPtr hash_buf4 = ((Leaf*)(treeCache.queryNode(idx[3]).get()))->getHash();
+  Auditor audit;
+  ndn::ConstBufferPtr hash_buf5 = audit.computeHash(hash_buf1, hash_buf2);
+  ndn::ConstBufferPtr hash_buf6 = audit.computeHash(hash_buf3, hash_buf4);
+  ndn::ConstBufferPtr hash_buf7 = audit.computeHash(hash_buf5, hash_buf6);
+  Index idx1;
+  idx1.number = 0; idx1.level = 2;
+  ndn::ConstBufferPtr hash_buf8 = ((IntermediateNode*)(treeCache.queryNode(idx1).get()))->getHash();
+  BOOST_CHECK(check_buffer_cache(hash_buf7, hash_buf8));
+  idx1.number = 70; idx1.level = 1;
+  ndn::ConstBufferPtr hash_buf70 = ((Leaf*)(treeCache.queryNode(idx[70]).get()))->getHash();
+  ndn::ConstBufferPtr hash_buf71 = ((Leaf*)(treeCache.queryNode(idx[71]).get()))->getHash();
+  ndn::ConstBufferPtr hash_buf72 = audit.computeHash(hash_buf70, hash_buf71);
+  ndn::ConstBufferPtr hash_buf73 = ((IntermediateNode*)
+                                    (treeCache.queryNode(idx1).get()))->getHash();
+  BOOST_CHECK(check_buffer_cache(hash_buf72, hash_buf73));
+
+  // Test Encoding Decoding
+  idx1.number = 0; idx1.level = 12;
+  SubTreePtr sub_ptr1 = treeCache.getSubTree(idx1);
+  std::string tmp_str = sub_ptr1->encoding();
+  SubTreePtr sub_ptr2 = treeCache.decoding(tmp_str);
+  BOOST_CHECK(sub_ptr1->getRootIndex().number == sub_ptr2->getRootIndex().number &&
+              sub_ptr1->getRootIndex().level == sub_ptr2->getRootIndex().level);
+  BOOST_CHECK(sub_ptr1->getRemainPosition() == sub_ptr2->getRemainPosition());
+  idx1.number = 0; idx1.level = 10;
+  ndn::ConstBufferPtr origin_buf = sub_ptr1->getHash(idx1);
+  ndn::ConstBufferPtr resume_buf = sub_ptr2->getHash(idx1);
+  BOOST_CHECK(check_buffer_cache(origin_buf, resume_buf));
+
+
+  // Test Sqlite3 (move m_database to public to test)
+  /*
+    idx1.number = 0; idx1.level = 12;
+    treeCache.m_database.addSubTree(sub_ptr1);
+    std::string str = treeCache.m_database.getSubTree(idx1);
+    SubTreePtr sub_ptr_sql = treeCache.decoding(str);
+    BOOST_CHECK(sub_ptr1->getRootIndex().number == sub_ptr_sql->getRootIndex().number &&
+    sub_ptr1->getRootIndex().level == sub_ptr_sql->getRootIndex().level);
+    BOOST_CHECK(sub_ptr1->getRemainPosition() == sub_ptr_sql->getRemainPosition());
+    idx1.number = 0; idx1.level = 10;
+    origin_buf = sub_ptr1->getHash(idx1);
+    resume_buf = sub_ptr_sql->getHash(idx1);
+    BOOST_CHECK(check_buffer_cache(origin_buf, resume_buf));
+    idx1.number = 0; idx1.level = 12;
+    BOOST_CHECK(treeCache.m_database.doesSubTreeExist(idx1) == true);
+    idx1.number = 300; idx1.level = 2;
+    BOOST_CHECK(treeCache.m_database.doesSubTreeExist(idx1) == false);
+
+    uint64_t sequence = 90;
+    treeCache.m_database.addLeafInfo(sequence, data_buf90);
+    ndn::ConstBufferPtr data_buf_sql = treeCache.m_database.getLeafInfo(sequence);
+    BOOST_CHECK(int((*data_buf_sql)[0]) == 90);
+    BOOST_CHECK(treeCache.m_database.doesLeafInfoExist(400) == false);
+    // insert update
+    treeCache.m_database.addLeafInfo(sequence, data_buf10);
+    data_buf_sql = treeCache.m_database.getLeafInfo(sequence);
+    BOOST_CHECK(int((*data_buf_sql)[0]) == 10);
+  */
+}
+
+
+BOOST_AUTO_TEST_SUITE_END()
+
+} // namespace nsl
diff --git a/tests/core/test-merkle-tree-sqlite3.cpp b/tests/core/test-merkle-tree-sqlite3.cpp
new file mode 100644
index 0000000..683fa1d
--- /dev/null
+++ b/tests/core/test-merkle-tree-sqlite3.cpp
@@ -0,0 +1,38 @@
+/* -*- Mode:C++; c-file-style:"gnu"; indent-tabs-mode:nil; -*- */
+/**
+ * Copyright (c) 2014,  Regents of the University of California
+ *
+ * This file is part of NSL (NDN Signature Logger).
+ * See AUTHORS.md for complete list of NSL authors and contributors.
+ *
+ * NSL is free software: you can redistribute it and/or modify it under the terms
+ * of the GNU General Public License as published by the Free Software Foundation,
+ * either version 3 of the License, or (at your option) any later version.
+ *
+ * NSL is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY;
+ * without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE.  See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License along with
+ * NSL, e.g., in COPYING.md file.  If not, see <http://www.gnu.org/licenses/>.
+ *
+ * @author Peizhen Guo <patrick.guopz@gmail.com>
+ */
+#include <boost-test.hpp>
+#include <iostream>
+
+#include "merkle-tree-sqlite3.hpp"
+#include "sub-tree.hpp"
+
+namespace nsl {
+
+BOOST_AUTO_TEST_SUITE(TestSqlite3)
+
+BOOST_AUTO_TEST_CASE(TestInit)
+{
+  MerkleTreeSqlite3 database;
+}
+
+BOOST_AUTO_TEST_SUITE_END()
+
+} // namespace nsl
diff --git a/tests/core/test-merkle-tree.cpp b/tests/core/test-merkle-tree.cpp
new file mode 100644
index 0000000..2260ccf
--- /dev/null
+++ b/tests/core/test-merkle-tree.cpp
@@ -0,0 +1,198 @@
+/* -*- Mode:C++; c-file-style:"gnu"; indent-tabs-mode:nil; -*- */
+/**
+ * Copyright (c) 2014,  Regents of the University of California
+ *
+ * This file is part of NSL (NDN Signature Logger).
+ * See AUTHORS.md for complete list of NSL authors and contributors.
+ *
+ * NSL is free software: you can redistribute it and/or modify it under the terms
+ * of the GNU General Public License as published by the Free Software Foundation,
+ * either version 3 of the License, or (at your option) any later version.
+ *
+ * NSL is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY;
+ * without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE.  See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License along with
+ * NSL, e.g., in COPYING.md file.  If not, see <http://www.gnu.org/licenses/>.
+ *
+ * @author Peizhen Guo <patrick.guopz@gmail.com>
+ */
+#include <boost-test.hpp>
+#include <iostream>
+
+#include "merkle-tree.hpp"
+
+namespace nsl {
+
+boost::test_tools::predicate_result check_buffer(ndn::ConstBufferPtr ptr1, ndn::ConstBufferPtr ptr2)
+{
+  bool result = true;
+  for (int i = 0; i < ptr1->size(); i++)
+    {
+      if ((*ptr1)[i] != (*ptr2)[i])
+        {
+          result = false;
+          break;
+        }
+    }
+  return result;
+}
+
+BOOST_AUTO_TEST_SUITE(TestTree)
+
+
+BOOST_AUTO_TEST_CASE(TestBuild)
+{
+  std::string str1 = "peizhen";
+  std::string str2 = "guo";
+  std::string str3 = "is";
+  std::string str4 = "building";
+  std::string str5 = "this";
+  std::string str6 = "logging";
+  std::string str7 = "system";
+  ndn::Buffer buf1;
+  ndn::Buffer buf2;
+  ndn::Buffer buf3;
+  ndn::Buffer buf4;
+  ndn::Buffer buf5;
+  ndn::Buffer buf6;
+  ndn::Buffer buf7;
+  for (int i=0; i < str1.size(); i++)
+    buf1.push_back(uint8_t(str1[i]));
+  for (int i=0; i < str2.size(); i++)
+    buf2.push_back(uint8_t(str2[i]));
+  for (int i=0; i < str3.size(); i++)
+    buf3.push_back(uint8_t(str3[i]));
+  for (int i=0; i < str4.size(); i++)
+    buf4.push_back(uint8_t(str4[i]));
+  for (int i=0; i < str5.size(); i++)
+    buf5.push_back(uint8_t(str5[i]));
+  for (int i=0; i < str6.size(); i++)
+    buf6.push_back(uint8_t(str6[i]));
+  for (int i=0; i < str7.size(); i++)
+    buf7.push_back(uint8_t(str7[i]));
+  ndn::ConstBufferPtr buf_p1 = boost::make_shared<ndn::Buffer>(buf1);
+  ndn::ConstBufferPtr buf_p2 = boost::make_shared<ndn::Buffer>(buf2);
+  ndn::ConstBufferPtr buf_p3 = boost::make_shared<ndn::Buffer>(buf3);
+  ndn::ConstBufferPtr buf_p4 = boost::make_shared<ndn::Buffer>(buf4);
+  ndn::ConstBufferPtr buf_p5 = boost::make_shared<ndn::Buffer>(buf5);
+  ndn::ConstBufferPtr buf_p6 = boost::make_shared<ndn::Buffer>(buf6);
+  ndn::ConstBufferPtr buf_p7 = boost::make_shared<ndn::Buffer>(buf7);
+
+  //Test add/get function
+  MerkleTree merkle_tree;
+  merkle_tree.addLeaf(buf_p1);
+  Index idx;
+  idx.number = 0;
+  idx.level = 0;
+  ndn::ConstBufferPtr tmp_ptr = ((Leaf*)(merkle_tree.getNode(idx).get()))->getData();
+  BOOST_CHECK(merkle_tree.getLeafNum() == 1 && merkle_tree.getLevel() == 1
+              && merkle_tree.getLevel() == idx.level + 1);
+  BOOST_CHECK(check_buffer(tmp_ptr, buf_p1));
+
+  merkle_tree.addLeaf(buf_p2);
+  idx.number += 1;
+  BOOST_CHECK(check_buffer(((Leaf*)(merkle_tree.getNode(idx).get()))->getData(), buf_p2));
+  idx.number = 0;
+  idx.level = 1;
+  BOOST_CHECK(((IntermediateNode*)(merkle_tree.getNode(idx).get()))->isFull() == true
+              && merkle_tree.getLeafNum() == 2 && merkle_tree.getLevel() == 2
+              && merkle_tree.getLevel() == idx.level + 1);
+
+
+  merkle_tree.addLeaf(buf_p3);
+  idx.number = 2; idx.level = 0;
+  BOOST_CHECK(check_buffer(((Leaf*)(merkle_tree.getNode(idx).get()))->getData(), buf_p3));
+  idx.level = 1;
+  BOOST_CHECK(((IntermediateNode*)(merkle_tree.getNode(idx).get()))->isFull() == false);
+  idx.number = 0;
+  BOOST_CHECK(((IntermediateNode*)(merkle_tree.getNode(idx).get()))->isFull() == true);
+  BOOST_CHECK(merkle_tree.getLeafNum() == 3 && merkle_tree.getLevel() == 3);
+
+
+  merkle_tree.addLeaf(buf_p4);
+  merkle_tree.addLeaf(buf_p5);
+  merkle_tree.addLeaf(buf_p6);
+  merkle_tree.addLeaf(buf_p7);
+  BOOST_CHECK(merkle_tree.getLeafNum() == 7 && merkle_tree.getLevel() == 4);
+  idx.level = 2;
+  idx.number = 4;
+  BOOST_CHECK(((IntermediateNode*)(merkle_tree.getNode(idx).get()))->isFull() == false);
+  idx.level = 1;
+  idx.number = 2;
+  BOOST_CHECK(((IntermediateNode*)(merkle_tree.getNode(idx).get()))->isFull() == true);
+}
+
+
+
+BOOST_AUTO_TEST_CASE(TestGenerateProof)
+{
+
+  std::string str1 = "peizhen";
+  std::string str2 = "guo";
+  std::string str3 = "is";
+  std::string str4 = "building";
+  std::string str5 = "this";
+  std::string str6 = "logging";
+  std::string str7 = "system";
+  ndn::Buffer buf1;
+  ndn::Buffer buf2;
+  ndn::Buffer buf3;
+  ndn::Buffer buf4;
+  ndn::Buffer buf5;
+  ndn::Buffer buf6;
+  ndn::Buffer buf7;
+  for (int i=0; i < str1.size(); i++)
+    buf1.push_back(uint8_t(str1[i]));
+  for (int i=0; i < str2.size(); i++)
+    buf2.push_back(uint8_t(str2[i]));
+  for (int i=0; i < str3.size(); i++)
+    buf3.push_back(uint8_t(str3[i]));
+  for (int i=0; i < str4.size(); i++)
+    buf4.push_back(uint8_t(str4[i]));
+  for (int i=0; i < str5.size(); i++)
+    buf5.push_back(uint8_t(str5[i]));
+  for (int i=0; i < str6.size(); i++)
+    buf6.push_back(uint8_t(str6[i]));
+  for (int i=0; i < str7.size(); i++)
+    buf7.push_back(uint8_t(str7[i]));
+  ndn::ConstBufferPtr buf_p1 = boost::make_shared<ndn::Buffer>(buf1);
+  ndn::ConstBufferPtr buf_p2 = boost::make_shared<ndn::Buffer>(buf2);
+  ndn::ConstBufferPtr buf_p3 = boost::make_shared<ndn::Buffer>(buf3);
+  ndn::ConstBufferPtr buf_p4 = boost::make_shared<ndn::Buffer>(buf4);
+  ndn::ConstBufferPtr buf_p5 = boost::make_shared<ndn::Buffer>(buf5);
+  ndn::ConstBufferPtr buf_p6 = boost::make_shared<ndn::Buffer>(buf6);
+  ndn::ConstBufferPtr buf_p7 = boost::make_shared<ndn::Buffer>(buf7);
+
+
+  // Test genProof function
+  MerkleTree merkle_tree;
+  merkle_tree.addLeaf(buf_p1);
+  merkle_tree.addLeaf(buf_p2);
+  merkle_tree.addLeaf(buf_p3);
+  merkle_tree.addLeaf(buf_p4);
+  merkle_tree.addLeaf(buf_p5);
+  merkle_tree.addLeaf(buf_p6);
+  merkle_tree.addLeaf(buf_p7);
+  std::vector<ConstNodePtr> verifyPathPresent = merkle_tree.generateProof(2, 5);
+  std::vector<ConstNodePtr> verifyPathPrevious = merkle_tree.generateProof(4, 6);
+  Index idx;
+  for (int i = 0; i < verifyPathPresent.size(); i++)
+    {
+      idx = (verifyPathPresent[i])->getIndex();
+      std::cout << idx.number << "," << idx.level << std::endl;
+    }
+  std::cout << std::endl;
+  for (int i = 0; i < verifyPathPrevious.size(); i++)
+    {
+      idx = (verifyPathPrevious[i])->getIndex();
+      std::cout << idx.number << "," << idx.level << std::endl;
+    }
+}
+
+
+
+BOOST_AUTO_TEST_SUITE_END()
+
+} // namespace nsl