refactor code

Change-Id: Ia2bc49ed8742d79000fd59f7e95fa9b957573c54
diff --git a/core/db.cpp b/core/db.cpp
new file mode 100644
index 0000000..22361c5
--- /dev/null
+++ b/core/db.cpp
@@ -0,0 +1,309 @@
+/* -*- Mode:C++; c-file-style:"gnu"; indent-tabs-mode:nil; -*- */
+/**
+ * Copyright (c) 2014,  Regents of the University of California
+ *
+ * This file is part of NSL (NDN Signature Logger).
+ * See AUTHORS.md for complete list of NSL authors and contributors.
+ *
+ * NSL is free software: you can redistribute it and/or modify it under the terms
+ * of the GNU General Public License as published by the Free Software Foundation,
+ * either version 3 of the License, or (at your option) any later version.
+ *
+ * NSL is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY;
+ * without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE.  See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License along with
+ * NSL, e.g., in COPYING.md file.  If not, see <http://www.gnu.org/licenses/>.
+ *
+ * See AUTHORS.md for complete list of nsl authors and contributors.
+ */
+
+#include "db.hpp"
+
+#include <sqlite3.h>
+#include <string>
+#include <boost/filesystem.hpp>
+
+namespace nsl {
+
+static const std::string INITIALIZATION =
+  "CREATE TABLE IF NOT EXISTS                    \n"
+  "  cTrees(                                     \n"
+  "    id                    INTEGER PRIMARY KEY,\n"
+  "    level                 INTEGER NOT NULL,   \n"
+  "    seqNo                 INTEGER NOT NULL,   \n"
+  "    data                  BLOB NOT NULL       \n"
+  "  );                                          \n"
+  "CREATE UNIQUE INDEX IF NOT EXISTS             \n"
+  "  cTreeIndex ON cTrees(level, seqNo);         \n"
+  "CREATE TRIGGER IF NOT EXISTS                  \n"
+  "  cTrees_after_insert_trigger                 \n"
+  "  AFTER INSERT ON cTrees                      \n"
+  "  FOR EACH ROW                                \n"
+  "  BEGIN                                       \n"
+  "    DELETE FROM pTrees                        \n"
+  "    WHERE level=NEW.level AND seqNo=NEW.seqNo;\n"
+  "  END;                                        \n"
+  "                                              \n"
+  "CREATE TABLE IF NOT EXISTS                    \n"
+  "  pTrees(                                     \n"
+  "    id                    INTEGER PRIMARY KEY,\n"
+  "    level                 INTEGER NOT NULL,   \n"
+  "    seqNo                 INTEGER NOT NULL,   \n"
+  "    nextLeafSeqNo         INTEGER NOT NULL,   \n"
+  "    data                  BLOB NOT NULL       \n"
+  "  );                                          \n"
+  "CREATE UNIQUE INDEX IF NOT EXISTS             \n"
+  "  pTreeIndex ON pTrees(level, seqNo);         \n"
+  "                                              \n"
+  "CREATE TABLE IF NOT EXISTS                    \n"
+  "  leaves(                                     \n"
+  "    id                    INTEGER PRIMARY KEY,\n"
+  "    dataSeqNo             INTEGER NOT NULL,   \n"
+  "    dataName              BLOB NOT NULL,      \n"
+  "    signerSeqNo           INTEGER NOT NULL,   \n"
+  "    timestamp             INTEGER NOT NULL,   \n"
+  "    isCert                INTEGER DEFAULT 0,  \n"
+  "    cert                  BLOB                \n"
+  "  );                                          \n"
+  "CREATE UNIQUE INDEX IF NOT EXISTS             \n"
+  "  leavesIndex ON leaves(dataSeqNo);           \n";
+
+
+/**
+ * A utility function to call the normal sqlite3_bind_blob where the value and length are
+ * block.wire() and block.size().
+ */
+static int
+sqlite3_bind_block(sqlite3_stmt* statement,
+                   int index,
+                   const Block& block,
+                   void(*destructor)(void*))
+{
+  return sqlite3_bind_blob(statement, index, block.wire(), block.size(), destructor);
+}
+
+/**
+ * A utility function to generate block by calling the normal sqlite3_column_text.
+ */
+static Block
+sqlite3_column_block(sqlite3_stmt* statement, int column)
+{
+  return Block(sqlite3_column_blob(statement, column), sqlite3_column_bytes(statement, column));
+}
+
+void
+Db::open(const std::string& dbDir)
+{
+  // Determine the path of logger database
+  if (dbDir == "")
+    throw Error("Db: empty db path");
+
+  boost::filesystem::path dir = boost::filesystem::path(dbDir);
+  boost::filesystem::create_directories(dir);
+
+  // Open database
+  int result = sqlite3_open_v2((dir / "sig-logger.db").c_str(), &m_db,
+                               SQLITE_OPEN_READWRITE | SQLITE_OPEN_CREATE,
+#ifdef NSL_DISABLE_SQLITE3_FS_LOCKING
+                               "unix-dotfile"
+#else
+                               nullptr
+#endif
+                               );
+
+  if (result != SQLITE_OK)
+    throw Error("SigLogger DB cannot be opened/created: " + dbDir);
+
+  // initialize SigLogger specific tables
+  char* errorMessage = nullptr;
+  result = sqlite3_exec(m_db, INITIALIZATION.c_str(), nullptr, nullptr, &errorMessage);
+  if (result != SQLITE_OK && errorMessage != nullptr) {
+    sqlite3_free(errorMessage);
+    throw Error("SigLogger DB cannot be initialized");
+  }
+
+  getMaxLeafSeq();
+}
+
+bool
+Db::insertSubTreeData(size_t level, const NonNegativeInteger& seqNo,
+                      const Data& data,
+                      bool isFull, const NonNegativeInteger& nextLeafSeqNo)
+{
+  sqlite3_stmt* statement;
+  if (isFull) {
+    sqlite3_prepare_v2(m_db,
+                       "INSERT INTO cTrees (level, seqNo, data) VALUES (?, ?, ?)",
+                       -1, &statement, nullptr);
+  }
+  else {
+    sqlite3_prepare_v2(m_db,
+                       "INSERT OR REPLACE INTO pTrees (level, seqNo, data, nextLeafSeqNo)\
+                        VALUES (?, ?, ?, ?)",
+                       -1, &statement, nullptr);
+  }
+  sqlite3_bind_int(statement, 1, level);
+  sqlite3_bind_int(statement, 2, seqNo);
+  sqlite3_bind_block(statement, 3, data.wireEncode(), SQLITE_TRANSIENT);
+  if (!isFull)
+    sqlite3_bind_int(statement, 4, nextLeafSeqNo);
+
+  int result = sqlite3_step(statement);
+  sqlite3_finalize(statement);
+
+  if (result == SQLITE_OK)
+    return true;
+  return false;
+}
+
+shared_ptr<Data>
+Db::getSubTreeData(size_t level, const NonNegativeInteger& seqNo)
+{
+  sqlite3_stmt* statement;
+  sqlite3_prepare_v2(m_db,
+                     "SELECT data FROM cTrees WHERE level=? AND seqNo=?",
+                     -1, &statement, nullptr);
+  sqlite3_bind_int(statement, 1, level);
+  sqlite3_bind_int(statement, 2, seqNo);
+
+  if (sqlite3_step(statement) == SQLITE_ROW) {
+    auto result = make_shared<Data>(sqlite3_column_block(statement, 0));
+    sqlite3_finalize(statement);
+    return result;
+  }
+
+  sqlite3_prepare_v2(m_db,
+                     "SELECT data FROM pTrees WHERE level=? AND seqNo=?",
+                     -1, &statement, nullptr);
+  sqlite3_bind_int(statement, 1, level);
+  sqlite3_bind_int(statement, 2, seqNo);
+
+  shared_ptr<Data> result;
+  if (sqlite3_step(statement) == SQLITE_ROW)
+    result = make_shared<Data>(sqlite3_column_block(statement, 0));
+
+  sqlite3_finalize(statement);
+  return result;
+}
+
+std::vector<shared_ptr<Data>>
+Db::getPendingSubTrees()
+{
+  sqlite3_stmt* statement;
+  sqlite3_prepare_v2(m_db,
+                     "SELECT data FROM pTrees ORDER BY level DESC",
+                     -1, &statement, nullptr);
+
+  std::vector<shared_ptr<Data>> datas;
+  while (sqlite3_step(statement) == SQLITE_ROW)
+    datas.push_back(make_shared<Data>(sqlite3_column_block(statement, 0)));
+
+  sqlite3_finalize(statement);
+  return datas;
+}
+
+bool
+Db::insertLeafData(const Leaf& leaf)
+{
+  if (leaf.getDataSeqNo() != m_nextLeafSeqNo)
+    return false;
+
+  sqlite3_stmt* statement;
+  sqlite3_prepare_v2(m_db,
+                     "INSERT INTO leaves (dataSeqNo, dataName, signerSeqNo, timestamp, isCert)\
+                      VALUES (?, ?, ?, ?, 0)",
+                     -1, &statement, nullptr);
+
+  sqlite3_bind_int(statement, 1, leaf.getDataSeqNo());
+  sqlite3_bind_block(statement, 2, leaf.getDataName().wireEncode(), SQLITE_TRANSIENT);
+  sqlite3_bind_int(statement, 3, leaf.getSignerSeqNo());
+  sqlite3_bind_int(statement, 4, leaf.getTimestamp());
+
+  int result = sqlite3_step(statement);
+  sqlite3_finalize(statement);
+
+  if (result == SQLITE_OK || result == SQLITE_DONE) {
+    m_nextLeafSeqNo++;
+    return true;
+  }
+
+  return false;
+}
+
+bool
+Db::insertLeafData(const Leaf& leaf, const Data& data)
+{
+  if (leaf.getDataSeqNo() != m_nextLeafSeqNo)
+    return false;
+
+  sqlite3_stmt* statement;
+  sqlite3_prepare_v2(m_db,
+                     "INSERT INTO leaves (dataSeqNo, dataName, signerSeqNo, timestamp, isCert, cert)\
+                      VALUES (?, ?, ?, ?, 1, ?)",
+                     -1, &statement, nullptr);
+
+  sqlite3_bind_int(statement, 1, leaf.getDataSeqNo());
+  sqlite3_bind_block(statement, 2, leaf.getDataName().wireEncode(), SQLITE_TRANSIENT);
+  sqlite3_bind_int(statement, 3, leaf.getSignerSeqNo());
+  sqlite3_bind_int(statement, 4, leaf.getTimestamp());
+  sqlite3_bind_block(statement, 5, data.wireEncode(), SQLITE_TRANSIENT);
+
+  int result = sqlite3_step(statement);
+  sqlite3_finalize(statement);
+
+  if (result == SQLITE_OK || result == SQLITE_DONE) {
+    m_nextLeafSeqNo++;
+    return true;
+  }
+
+  return false;
+}
+
+std::pair<shared_ptr<Leaf>, shared_ptr<Data>>
+Db::getLeaf(const NonNegativeInteger& seqNo)
+{
+  sqlite3_stmt* statement;
+  sqlite3_prepare_v2(m_db,
+                     "SELECT dataName, signerSeqNo, timestamp, cert\
+                      FROM leaves WHERE dataSeqNo=?",
+                     -1, &statement, nullptr);
+
+  sqlite3_bind_int(statement, 1, seqNo);
+
+  if (sqlite3_step(statement) == SQLITE_ROW) {
+    auto leaf = make_shared<Leaf>(Name(sqlite3_column_block(statement, 0)),
+                                  sqlite3_column_int(statement, 2),
+                                  seqNo,
+                                  sqlite3_column_int(statement, 1));
+
+    shared_ptr<Data> data;
+    if (sqlite3_column_bytes(statement, 3) != 0) {
+      data = make_shared<Data>(sqlite3_column_block(statement, 3));
+    }
+    sqlite3_finalize(statement);
+    return std::make_pair(leaf, data);
+  }
+  else {
+    sqlite3_finalize(statement);
+    return std::make_pair(nullptr, nullptr);
+  }
+}
+
+const NonNegativeInteger&
+Db::getMaxLeafSeq()
+{
+  sqlite3_stmt* statement;
+
+  sqlite3_prepare_v2(m_db, "SELECT count(dataSeqNo) FROM leaves", -1, &statement, nullptr);
+  if (sqlite3_step(statement) == SQLITE_ROW)
+    m_nextLeafSeqNo = sqlite3_column_int(statement, 0);
+  else
+    throw Error("getMaxLeafSeq: db error");
+
+  sqlite3_finalize(statement);
+  return m_nextLeafSeqNo;
+}
+
+} // namespace nsl