security: Reorganizing source code to prepare for support of two version of NDN certificates

This commit also removes unused ndn_digestSha256 function and deprecates
crypto::sha256 in favor of crypto::computeSha256Digest in util/crypto.hpp.

Change-Id: I24ee50ff073a96b868633bdf2cfade412d3605f3
Refs: #3098
diff --git a/src/security/v1/certificate-extension.cpp b/src/security/v1/certificate-extension.cpp
new file mode 100644
index 0000000..d871eac
--- /dev/null
+++ b/src/security/v1/certificate-extension.cpp
@@ -0,0 +1,77 @@
+/* -*- Mode:C++; c-file-style:"gnu"; indent-tabs-mode:nil; -*- */
+/**
+ * Copyright (c) 2013-2016 Regents of the University of California.
+ *
+ * This file is part of ndn-cxx library (NDN C++ library with eXperimental eXtensions).
+ *
+ * ndn-cxx library is free software: you can redistribute it and/or modify it under the
+ * terms of the GNU Lesser General Public License as published by the Free Software
+ * Foundation, either version 3 of the License, or (at your option) any later version.
+ *
+ * ndn-cxx library is distributed in the hope that it will be useful, but WITHOUT ANY
+ * WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+ * PARTICULAR PURPOSE.  See the GNU Lesser General Public License for more details.
+ *
+ * You should have received copies of the GNU General Public License and GNU Lesser
+ * General Public License along with ndn-cxx, e.g., in COPYING.md file.  If not, see
+ * <http://www.gnu.org/licenses/>.
+ *
+ * See AUTHORS.md for complete list of ndn-cxx authors and contributors.
+ *
+ * @author Yingdi Yu <http://irl.cs.ucla.edu/~yingdi/>
+ * @author Alexander Afanasyev <http://lasr.cs.ucla.edu/afanasyev/index.html>
+ */
+
+#include "certificate-extension.hpp"
+#include "cryptopp.hpp"
+
+namespace ndn {
+namespace security {
+namespace v1 {
+
+void
+CertificateExtension::encode(CryptoPP::BufferedTransformation& out) const
+{
+  using namespace CryptoPP;
+
+  // Extension ::= SEQUENCE {
+  //        extnID      OBJECT IDENTIFIER,
+  //        critical    BOOLEAN DEFAULT FALSE,
+  //        extnValue   OCTET STRING  }
+
+  DERSequenceEncoder extension(out);
+  {
+    m_extensionId.encode(extension);
+    DEREncodeUnsigned(extension, m_isCritical, BOOLEAN);
+    DEREncodeOctetString(extension, m_extensionValue.buf(), m_extensionValue.size());
+  }
+  extension.MessageEnd();
+}
+
+void
+CertificateExtension::decode(CryptoPP::BufferedTransformation& in)
+{
+  using namespace CryptoPP;
+
+  // Extension ::= SEQUENCE {
+  //        extnID      OBJECT IDENTIFIER,
+  //        critical    BOOLEAN DEFAULT FALSE,
+  //        extnValue   OCTET STRING  }
+
+  BERSequenceDecoder extension(in);
+  {
+    m_extensionId.decode(extension);
+    BERDecodeUnsigned(extension, m_isCritical, BOOLEAN);
+
+    // the extra copy operation can be optimized, but not trivial,
+    // since the length is not known in advance
+    SecByteBlock tmpBlock;
+    BERDecodeOctetString(extension, tmpBlock);
+    m_extensionValue.assign(tmpBlock.begin(), tmpBlock.end());
+  }
+  extension.MessageEnd();
+}
+
+} // namespace v1
+} // namespace security
+} // namespace ndn