catalog: initial query module

Change-Id: I0ddd22c5774d5e5d54c1ee80e0f01566fed311fd
refs: #2638
diff --git a/catalog/src/catalog/catalog.hpp b/catalog/src/catalog/catalog.hpp
new file mode 100644
index 0000000..fe680d9
--- /dev/null
+++ b/catalog/src/catalog/catalog.hpp
@@ -0,0 +1,92 @@
+/** NDN-Atmos: Cataloging Service for distributed data originally developed
+ *  for atmospheric science data
+ *  Copyright (C) 2015 Colorado State University
+ *
+ *  NDN-Atmos is free software: you can redistribute it and/or modify
+ *  it under the terms of the GNU General Public License as published by
+ *  the Free Software Foundation, either version 3 of the License, or
+ *  (at your option) any later version.
+ *
+ *  NDN-Atmos is distributed in the hope that it will be useful,
+ *  but WITHOUT ANY WARRANTY; without even the implied warranty of
+ *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ *  GNU General Public License for more details.
+ *
+ *  You should have received a copy of the GNU General Public License
+ *  along with NDN-Atmos.  If not, see <http://www.gnu.org/licenses/>.
+**/
+
+#ifndef ATMOS_CATALOG_CATALOG_HPP
+#define ATMOS_CATALOG_CATALOG_HPP
+
+#include "query/query-adapter.hpp"
+#include "publish/publish-adapter.hpp"
+
+#include <ndn-cxx/data.hpp>
+#include <ndn-cxx/face.hpp>
+#include <ndn-cxx/interest.hpp>
+#include <ndn-cxx/name.hpp>
+#include <ndn-cxx/security/key-chain.hpp>
+
+#include <memory>
+#include <string>
+
+namespace atmos {
+namespace catalog {
+
+/**
+ * The Catalog acts as a façade around the Database.
+ * It is Templated on a DatabaseHandler: the connection into the database that it will use to
+ * communicate with the actual system
+ */
+template <typename DatabaseHandler>
+class Catalog {
+public:
+  /**
+   * Constructor
+   *
+   * @param aFace:            Face that will be used for NDN communications
+   * @param aKeyChain:        KeyChain to sign query responses and evaluate the incoming publish
+   *                          and ChronoSync requests against
+   * @param aDatabaseHandler: <typename DatabaseHandler> to the database that stores our catalog
+   * @oaram aPrefix:          Name that will define the prefix to all queries and publish requests
+   *                          that will be routed to this specific Catalog Instance
+   */
+  Catalog(std::shared_ptr<ndn::Face> aFace, std::shared_ptr<ndn::KeyChain> aKeyChain,
+          std::shared_ptr<DatabaseHandler> aDatabaseHandler, const ndn::Name& aPrefix);
+
+  /**
+   * Destructor
+   */
+  virtual
+  ~Catalog();
+
+protected:
+  // Templated Adapter to handle Query requests
+  atmos::query::QueryAdapter<DatabaseHandler> m_queryAdapter;
+  // Templated Adapter to handle Publisher requests
+  atmos::publish::PublishAdapter<DatabaseHandler> m_publishAdapter;
+}; // class Catalog
+
+template <typename DatabaseHandler>
+Catalog<DatabaseHandler>::Catalog(std::shared_ptr<ndn::Face> aFace,
+                                  std::shared_ptr<ndn::KeyChain> aKeyChain,
+                                  std::shared_ptr<DatabaseHandler> aDatabaseHandler,
+                                  const ndn::Name& aPrefix)
+
+  : m_queryAdapter(aFace, aKeyChain, aDatabaseHandler, aPrefix)
+  , m_publishAdapter(aFace, aKeyChain, aDatabaseHandler, aPrefix)
+{
+  // empty
+}
+
+template <typename DatabaseHandler>
+Catalog<DatabaseHandler>::~Catalog()
+{
+  // empty
+}
+
+} // namespace catalog
+} // namespace atmos
+
+#endif //ATMOS_CATALOG_CATALOG_HPP
diff --git a/catalog/src/main.cpp b/catalog/src/main.cpp
index 6e2fae1..3f199ee 100644
--- a/catalog/src/main.cpp
+++ b/catalog/src/main.cpp
@@ -1,44 +1,51 @@
-/* -*- Mode: C++; c-file-style: "gnu"; indent-tabs-mode:nil -*- */
-/*
- * Copyright (c) 2015, Colorado State University.
+/** NDN-Atmos: Cataloging Service for distributed data originally developed
+ *  for atmospheric science data
+ *  Copyright (C) 2015 Colorado State University
  *
- * This file is part of ndn-atmos.
+ *  NDN-Atmos is free software: you can redistribute it and/or modify
+ *  it under the terms of the GNU General Public License as published by
+ *  the Free Software Foundation, either version 3 of the License, or
+ *  (at your option) any later version.
  *
- * ndn-atmos is free software: you can redistribute it and/or modify it under the
- * terms of the GNU Lesser General Public License as published by the Free Software
- * Foundation, either version 3 of the License, or (at your option) any later version.
+ *  NDN-Atmos is distributed in the hope that it will be useful,
+ *  but WITHOUT ANY WARRANTY; without even the implied warranty of
+ *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ *  GNU General Public License for more details.
  *
- * ndn-atmos is distributed in the hope that it will be useful, but WITHOUT ANY
- * WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A
- * PARTICULAR PURPOSE.  See the GNU Lesser General Public License for more details.
- *
- * You should have received copies of the GNU General Public License and GNU Lesser
- * General Public License along with ndn-atmos, e.g., in COPYING.md file.  If not, see
- * <http://www.gnu.org/licenses/>.
- *
- * See AUTHORS.md for complete list of ndn-atmos authors and contributors.
- */
+ *  You should have received a copy of the GNU General Public License
+ *  along with NDN-Atmos.  If not, see <http://www.gnu.org/licenses/>.
+**/
+
+#include "catalog/catalog.hpp"
+#include "util/mysql-util.hpp"
 
 #include <ChronoSync/socket.hpp>
-#include <ndn-cxx/face.hpp>
-#include <json/value.h>
-#include <mysql.h>
 
-using namespace std;
-using namespace ndn;
+#include <ndn-cxx/data.hpp>
+#include <ndn-cxx/face.hpp>
+#include <ndn-cxx/interest.hpp>
+#include <ndn-cxx/name.hpp>
+#include <ndn-cxx/security/key-chain.hpp>
+
+#include "mysql/mysql.h"
+
+#include <memory>
 
 int main()
 {
-  Face face; // use ndn-cxx
-  shared_ptr<chronosync::Socket> socket; // use ChronoSync
+  std::shared_ptr<chronosync::Socket> socket; // use ChronoSync
+  std::shared_ptr<ndn::Face> face(new ndn::Face());
+  std::shared_ptr<ndn::KeyChain> keyChain(new ndn::KeyChain());
 
-  Json::Value root; // use jsoncpp
-  MYSQL *con = mysql_init(NULL);
-  if (con == NULL)
-  {
-    fprintf(stderr, "%s\n", mysql_error(con));
-    return 1;
-  }
+  // This should be unique to each instance
+  ndn::Name aName("/catalog/myUniqueName");
+
+  atmos::util::ConnectionDetails mysqlID("atmos-den.es.net", "testuser", "test623", "testdb");
+  std::shared_ptr<MYSQL> conn;
+  conn = atmos::util::MySQLConnectionSetup(mysqlID);
+
+  atmos::catalog::Catalog<MYSQL> catalog(face, keyChain, conn, aName);
+  face->processEvents();
 
   return 0;
 }
diff --git a/catalog/src/publish/publish-adapter.hpp b/catalog/src/publish/publish-adapter.hpp
new file mode 100644
index 0000000..c6b322b
--- /dev/null
+++ b/catalog/src/publish/publish-adapter.hpp
@@ -0,0 +1,139 @@
+/** NDN-Atmos: Cataloging Service for distributed data originally developed
+ *  for atmospheric science data
+ *  Copyright (C) 2015 Colorado State University
+ *
+ *  NDN-Atmos is free software: you can redistribute it and/or modify
+ *  it under the terms of the GNU General Public License as published by
+ *  the Free Software Foundation, either version 3 of the License, or
+ *  (at your option) any later version.
+ *
+ *  NDN-Atmos is distributed in the hope that it will be useful,
+ *  but WITHOUT ANY WARRANTY; without even the implied warranty of
+ *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ *  GNU General Public License for more details.
+ *
+ *  You should have received a copy of the GNU General Public License
+ *  along with NDN-Atmos.  If not, see <http://www.gnu.org/licenses/>.
+**/
+
+#ifndef ATMOS_PUBLISH_PUBLISH_ADAPTER_HPP
+#define ATMOS_PUBLISH_PUBLISH_ADAPTER_HPP
+
+#include "util/catalog-adapter.hpp"
+#include "util/mysql-util.hpp"
+
+#include <json/reader.h>
+#include <json/value.h>
+#include <json/writer.h>
+
+#include <ndn-cxx/face.hpp>
+#include <ndn-cxx/interest.hpp>
+#include <ndn-cxx/interest-filter.hpp>
+#include <ndn-cxx/name.hpp>
+#include <ndn-cxx/security/key-chain.hpp>
+
+#include "mysql/mysql.h"
+
+#include <memory>
+#include <string>
+
+namespace atmos {
+namespace publish {
+
+/**
+ * PublishAdapter handles the Publish usecases for the catalog
+ */
+template <typename DatabaseHandler>
+class PublishAdapter : public atmos::util::CatalogAdapter<DatabaseHandler> {
+public:
+  /**
+   * Constructor
+   *
+   * @param face:            Face that will be used for NDN communications
+   * @param keyChain:        KeyChain to sign query responses and evaluate the incoming publish
+   *                          and ChronoSync requests against
+   * @param databaseHandler: <typename DatabaseHandler> to the database that stores our catalog
+   * @oaram prefix:          Name that will define the prefix to all publish requests
+   *                          that will be routed to this specific Catalog Instance
+   */
+  PublishAdapter(std::shared_ptr<ndn::Face> face, std::shared_ptr<ndn::KeyChain> keyChain,
+                 std::shared_ptr<DatabaseHandler> databaseHandler, const ndn::Name& prefix);
+
+
+  /**
+   * Destructor
+   */
+  virtual
+  ~PublishAdapter();
+
+protected:
+  /**
+   * Initial "please publish this" Interests
+   *
+   * @param filter:   InterestFilter that caused this Interest to be routed
+   * @param interest: Interest that needs to be handled
+   */
+  virtual void
+  onInterest(const ndn::InterestFilter& filter, const ndn::Interest& interest);
+
+  /**
+   * Data containing the actual thing we need to publish
+   *
+   * @param interest: Interest that caused this Data to be routed
+   * @param data:     Data that needs to be handled
+   */
+  virtual void
+  onData(const ndn::Interest& interest, const ndn::Data& data);
+
+  // @todo: Should we do anything special with the timeouts for the publish requests?
+  //        If so, overwrite onTimeout()
+
+};
+
+template <typename DatabaseHandler>
+PublishAdapter<DatabaseHandler>::PublishAdapter(std::shared_ptr<ndn::Face> face,
+                           std::shared_ptr<ndn::KeyChain> keyChain,
+                           std::shared_ptr<DatabaseHandler> databaseHandler,
+                           const ndn::Name& prefix)
+  : atmos::util::CatalogAdapter<DatabaseHandler>(face, keyChain, databaseHandler,
+  ndn::Name(prefix).append("/publish"))
+{
+  face->setInterestFilter(ndn::InterestFilter(ndn::Name(prefix).append("/publish")),
+                                               bind(&atmos::publish::PublishAdapter<DatabaseHandler>::onInterest,
+                                                    this, _1, _2),
+                                               bind(&atmos::publish::PublishAdapter<DatabaseHandler>::onRegisterSuccess,
+                                                    this, _1),
+                                               bind(&atmos::publish::PublishAdapter<DatabaseHandler>::onRegisterFailure,
+                                                    this, _1, _2));
+
+  std::shared_ptr<ndn::Interest> request(std::make_shared<ndn::Interest>(ndn::Name(prefix).append("/publish")));
+  atmos::util::CatalogAdapter<DatabaseHandler>::m_face->expressInterest(*request,
+                                                                        bind(&atmos::publish::PublishAdapter<DatabaseHandler>::onData,
+                                                                             this, _1, _2),
+                                                                        bind(&atmos::publish::PublishAdapter<DatabaseHandler>::onTimeout,
+                                                                             this, _1));
+}
+
+template <typename DatabaseHandler>
+PublishAdapter<DatabaseHandler>::~PublishAdapter()
+{
+  // empty
+}
+
+template <typename DatabaseHandler>
+void
+PublishAdapter<DatabaseHandler>::onInterest(const ndn::InterestFilter& filter, const ndn::Interest& interest)
+{
+  // @todo: Request the data for publish
+}
+
+template <typename DatabaseHandler>
+void
+PublishAdapter<DatabaseHandler>::onData(const ndn::Interest& interest, const ndn::Data& data)
+{
+  // @todo handle publishing the data
+}
+
+} // namespace publish
+} // namespace atmos
+#endif //ATMOS_PUBLISH_PUBLISH_ADAPTER_HPP
diff --git a/catalog/src/query/query-adapter.hpp b/catalog/src/query/query-adapter.hpp
new file mode 100644
index 0000000..ca86d5e
--- /dev/null
+++ b/catalog/src/query/query-adapter.hpp
@@ -0,0 +1,395 @@
+/** NDN-Atmos: Cataloging Service for distributed data originally developed
+ *  for atmospheric science data
+ *  Copyright (C) 2015 Colorado State University
+ *
+ *  NDN-Atmos is free software: you can redistribute it and/or modify
+ *  it under the terms of the GNU General Public License as published by
+ *  the Free Software Foundation, either version 3 of the License, or
+ *  (at your option) any later version.
+ *
+ *  NDN-Atmos is distributed in the hope that it will be useful,
+ *  but WITHOUT ANY WARRANTY; without even the implied warranty of
+ *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ *  GNU General Public License for more details.
+ *
+ *  You should have received a copy of the GNU General Public License
+ *  along with NDN-Atmos.  If not, see <http://www.gnu.org/licenses/>.
+**/
+
+#ifndef ATMOS_QUERY_QUERY_ADAPTER_HPP
+#define ATMOS_QUERY_QUERY_ADAPTER_HPP
+
+#include "util/catalog-adapter.hpp"
+#include "util/mysql-util.hpp"
+
+#include <thread>
+
+
+#include <json/reader.h>
+#include <json/value.h>
+#include <json/writer.h>
+
+#include <ndn-cxx/data.hpp>
+#include <ndn-cxx/face.hpp>
+#include <ndn-cxx/interest.hpp>
+#include <ndn-cxx/interest-filter.hpp>
+#include <ndn-cxx/name.hpp>
+#include <ndn-cxx/security/key-chain.hpp>
+#include <ndn-cxx/util/time.hpp>
+#include <ndn-cxx/encoding/encoding-buffer.hpp>
+
+#include "mysql/mysql.h"
+
+#include <iostream>
+
+#include <map>
+#include <memory>
+#include <mutex>
+#include <sstream>
+#include <string>
+
+namespace atmos {
+namespace query {
+
+static const size_t MAX_SEGMENT_SIZE = ndn::MAX_NDN_PACKET_SIZE >> 1;
+
+/**
+ * QueryAdapter handles the Query usecases for the catalog
+ */
+template <typename DatabaseHandler>
+class QueryAdapter : public atmos::util::CatalogAdapter<DatabaseHandler> {
+public:
+  /**
+   * Constructor
+   *
+   * @param face:            Face that will be used for NDN communications
+   * @param keyChain:        KeyChain to sign query responses and evaluate the incoming query
+   *                          and ChronoSync requests against
+   * @param databaseHandler: <typename DatabaseHandler> to the database that stores our catalog
+   * @param prefix:          Name that will define the prefix to all queries requests that will be
+   *                          routed to this specific Catalog Instance
+   */
+  QueryAdapter(std::shared_ptr<ndn::Face> face, std::shared_ptr<ndn::KeyChain> keyChain,
+               std::shared_ptr<DatabaseHandler> databaseHandler, const ndn::Name& prefix);
+
+  /**
+   * Destructor
+   */
+  virtual
+  ~QueryAdapter();
+
+  /**
+   * Handles incoming query requests by stripping the filter off the Interest to get the
+   * actual request out. This removes the need for a 2-step Interest-Data retrieval.
+   *
+   * @param filter:   InterestFilter that caused this Interest to be routed
+   * @param interest: Interest that needs to be handled
+   */
+  virtual void
+  onQueryInterest(const ndn::InterestFilter& filter, const ndn::Interest& interest);
+
+  /**
+   * Handles requests for responses to an existing query
+   *
+   * @param filter:   InterestFilter that caused this Interest to be routed
+   * @param interest: Interest that needs to be handled
+   */
+  virtual void
+  onQueryResultsInterest(const ndn::InterestFilter& filter, const ndn::Interest& interest);
+
+private:
+  /**
+   * Helper function that generates query results
+   *
+   * @param face:            Face that will be used for NDN communications
+   * @param keyChain:        KeyChain to sign query responses and evaluate the incoming query
+   *                          and ChronoSync requests against
+   * @param databaseHandler: <typename DatabaseHandler> to the database that stores our catalog
+   */
+  void
+  query(std::shared_ptr<ndn::Face> face, std::shared_ptr<ndn::KeyChain> keyChain,
+        std::shared_ptr<const ndn::Interest> interest,
+        std::shared_ptr<DatabaseHandler> databaseHandler);
+
+  /**
+   * Helper function that publishes JSON
+   *
+   * @param face:          Face that will send the Data out on
+   * @param keyChain:      KeyChain to sign the Data we're creating
+   * @param segmentPrefix: Name that identifies the Prefix for the Data
+   * @param value:         Json::Value to be sent in the Data
+   * @param segmentNo:     uint64_t the segment for this Data
+   * @param isFinalBlock:   bool to indicate whether this needs to be flagged in the Data as the last entry
+   * @param isAutocomplete: bool to indicate whether this is an autocomplete message
+   */
+  void
+  publishJson(std::shared_ptr<ndn::Face> face, std::shared_ptr<ndn::KeyChain> keyChain,
+              const ndn::Name& segmentPrefix, const Json::Value& value,
+              uint64_t segmentNo, bool isFinalBlock, bool isAutocomplete);
+
+  /**
+   * Helper function that publishes char*
+   *
+   * @param face:          Face that will send the Data out on
+   * @param keyChain:      KeyChain to sign the Data we're creating
+   * @param segmentPrefix: Name that identifies the Prefix for the Data
+   * @param payload:       char* to be sent in the Data
+   * @param payloadLength: size_t to indicate how long payload is
+   * @param segmentNo:     uint64_t the segment for this Data
+   * @param isFinalBlock:   bool to indicate whether this needs to be flagged in the Data as the last entry
+   */
+  void
+  publishSegment(std::shared_ptr<ndn::Face> face, std::shared_ptr<ndn::KeyChain> keyChain,
+                 const ndn::Name& segmentPrefix, const char* payload, size_t payloadLength,
+                 uint64_t segmentNo, bool isFinalBlock);
+
+  // mutex to control critical sections
+  std::mutex m_mutex;
+  // @{ needs m_mutex protection
+  // The Queries we are currently writing to
+  std::map<std::string, std::shared_ptr<ndn::Data>> m_activeQueryToFirstResponse;
+  // @}
+};
+
+
+template <typename DatabaseHandler>
+QueryAdapter<DatabaseHandler>::QueryAdapter(std::shared_ptr<ndn::Face> face,
+                           std::shared_ptr<ndn::KeyChain> keyChain,
+                           std::shared_ptr<DatabaseHandler> databaseHandler,
+                           const ndn::Name& prefix)
+  : atmos::util::CatalogAdapter<DatabaseHandler>(face, keyChain, databaseHandler, prefix)
+{
+  face->setInterestFilter(ndn::InterestFilter(ndn::Name(prefix).append("query")),
+                           bind(&atmos::query::QueryAdapter<DatabaseHandler>::onQueryInterest,
+                                this, _1, _2),
+                           bind(&atmos::query::QueryAdapter<DatabaseHandler>::onRegisterSuccess,
+                                this, _1),
+                           bind(&atmos::query::QueryAdapter<DatabaseHandler>::onRegisterFailure,
+                                this, _1, _2));
+
+  face->setInterestFilter(ndn::InterestFilter(ndn::Name(prefix).append("query-results")),
+                           bind(&atmos::query::QueryAdapter<DatabaseHandler>::onQueryResultsInterest,
+                                this, _1, _2),
+                           bind(&atmos::query::QueryAdapter<DatabaseHandler>::onRegisterSuccess,
+                                this, _1),
+                           bind(&atmos::query::QueryAdapter<DatabaseHandler>::onRegisterFailure,
+                                this, _1, _2));
+}
+
+template <typename DatabaseHandler>
+QueryAdapter<DatabaseHandler>::~QueryAdapter(){
+  // empty
+}
+
+template <typename DatabaseHandler>
+void
+QueryAdapter<DatabaseHandler>::onQueryInterest(const ndn::InterestFilter& filter, const ndn::Interest& interest)
+{
+  // strictly enforce query initialization namespace. Name should be our local prefix + "query" + parameters
+  if (interest.getName().size() != filter.getPrefix().size() + 1) {
+    // @todo: return a nack
+    return;
+  }
+
+  std::shared_ptr<const ndn::Interest> interestPtr = interest.shared_from_this();
+
+  std::thread queryThread(&QueryAdapter<DatabaseHandler>::query, this,
+                          atmos::util::CatalogAdapter<DatabaseHandler>::m_face,
+                          atmos::util::CatalogAdapter<DatabaseHandler>::m_keyChain, interestPtr,
+                          atmos::util::CatalogAdapter<DatabaseHandler>::m_databaseHandler);
+  queryThread.join();
+}
+
+template <typename DatabaseHandler>
+void
+QueryAdapter<DatabaseHandler>::onQueryResultsInterest(const ndn::InterestFilter& filter,
+                                                      const ndn::Interest& interest)
+{
+  // FIXME Results are currently getting served out of the forwarder's
+  // CS so we just ignore any retrieval Interests that hit us for
+  // now. In the future, this should check some form of
+  // InMemoryStorage.
+  std::cout << "Got to query result" << std::endl;
+}
+
+template <typename DatabaseHandler>
+void
+QueryAdapter<DatabaseHandler>::publishJson(std::shared_ptr<ndn::Face> face,
+                                              std::shared_ptr<ndn::KeyChain> keyChain,
+                                              const ndn::Name& segmentPrefix,
+                                              const Json::Value& value,
+                                              uint64_t segmentNo, bool isFinalBlock,
+                                              bool isAutocomplete)
+{
+  Json::Value entry;
+  Json::FastWriter fastWriter;
+  if (isAutocomplete) {
+    entry["next"] = value;
+  } else {
+    entry["results"] = value;
+  }
+  const std::string jsonMessage = fastWriter.write(entry);
+  publishSegment(face, keyChain, segmentPrefix, jsonMessage.c_str(), jsonMessage.size() + 1,
+                 segmentNo, isFinalBlock);
+}
+
+template <typename DatabaseHandler>
+void
+QueryAdapter<DatabaseHandler>::publishSegment(std::shared_ptr<ndn::Face> face,
+                                              std::shared_ptr<ndn::KeyChain> keyChain,
+                                              const ndn::Name& segmentPrefix,
+                                              const char* payload, size_t payloadLength,
+                                              uint64_t segmentNo, bool isFinalBlock)
+{
+  ndn::Name segmentName(segmentPrefix);
+  if (isFinalBlock) {
+    segmentName.append("END");
+  } else {
+    segmentName.appendSegment(segmentNo);
+  }
+
+  std::shared_ptr<ndn::Data> data = std::make_shared<ndn::Data>(segmentName);
+  data->setContent(reinterpret_cast<const uint8_t*>(payload), payloadLength);
+  data->setFreshnessPeriod(ndn::time::milliseconds(10000));
+
+  if (isFinalBlock) {
+    data->setFinalBlockId(segmentName[-1]);
+  }
+  keyChain->sign(*data);
+  face->put(*data);
+}
+
+template <typename DatabaseHandler>
+void
+QueryAdapter<DatabaseHandler>::query(std::shared_ptr<ndn::Face> face,
+                                     std::shared_ptr<ndn::KeyChain> keyChain,
+                                     std::shared_ptr<const ndn::Interest> interest,
+                                     std::shared_ptr<DatabaseHandler> databaseHandler)
+{
+  // @todo: we should return a NACK as we have no database
+}
+
+
+template <>
+void
+QueryAdapter<MYSQL>::query(std::shared_ptr<ndn::Face> face,
+                           std::shared_ptr<ndn::KeyChain> keyChain,
+                           std::shared_ptr<const ndn::Interest> interest,
+                           std::shared_ptr<MYSQL> databaseHandler)
+{
+  std::cout << "Running query" << std::endl;
+  // 1) Strip the prefix off the ndn::Interest's ndn::Name
+  // +1 to grab JSON component after "query" component
+  const std::string jsonQuery(reinterpret_cast<const char*>(interest->getName()[m_prefix.size()+1].value()));
+
+  // For efficiency, do a double check. Once without the lock, then with it.
+  if (m_activeQueryToFirstResponse.find(jsonQuery) != m_activeQueryToFirstResponse.end()) {
+    m_mutex.lock();
+    { // !!! BEGIN CRITICAL SECTION !!!
+      // If this fails upon locking, we removed it during our search.
+      // An unusual race-condition case, which requires things like PIT aggregation to be off.
+      auto iter = m_activeQueryToFirstResponse.find(jsonQuery);
+      if (iter != m_activeQueryToFirstResponse.end()) {
+        face->put(*(iter->second));
+        m_mutex.unlock(); //escape lock
+        return;
+      }
+    } // !!!  END  CRITICAL SECTION !!!
+    m_mutex.unlock();
+  }
+
+  // 2) From the remainder of the ndn::Interest's ndn::Name, get the JSON out
+  Json::Value parsedFromString;
+  Json::Reader reader;
+  if (reader.parse(jsonQuery, parsedFromString)) {
+    const ndn::name::Component version = ndn::name::Component::fromVersion(ndn::time::toUnixTimestamp(ndn::time::system_clock::now()).count());
+
+    // JSON parsed ok, so we can acknowledge successful receipt of the query
+    ndn::Name ackName(interest->getName());
+    ackName.append(version);
+    ackName.append("OK");
+
+    std::shared_ptr<ndn::Data> ack(std::make_shared<ndn::Data>(ackName));
+
+    m_mutex.lock();
+    { // !!! BEGIN CRITICAL SECTION !!!
+      // An unusual race-condition case, which requires things like PIT aggregation to be off.
+      auto iter = m_activeQueryToFirstResponse.find(jsonQuery);
+      if (iter != m_activeQueryToFirstResponse.end()) {
+        face->put(*(iter->second));
+        m_mutex.unlock(); // escape lock
+        return;
+      }
+      // This is where things are expensive so we save them for the lock
+      keyChain->sign(*ack);
+      face->put(*ack);
+      m_activeQueryToFirstResponse.insert(std::pair<std::string,
+                                                    std::shared_ptr<ndn::Data>>(jsonQuery, ack));
+    } // !!!  END  CRITICAL SECTION !!!
+    m_mutex.unlock();
+
+    // 3) Convert the JSON Query into a MySQL one
+    bool autocomplete = false;
+    std::stringstream mysqlQuery;
+    mysqlQuery << "SELECT name FROM cmip5";
+    bool input = false;
+    for (Json::Value::iterator iter = parsedFromString.begin(); iter != parsedFromString.end(); ++iter)
+    {
+      Json::Value key = iter.key();
+      Json::Value value = (*iter);
+
+      if (input) {
+        mysqlQuery << " AND";
+      } else {
+        mysqlQuery << " WHERE";
+      }
+
+      // Auto-complete case
+      if (key.asString().compare("?") == 0) {
+        mysqlQuery << " name REGEXP '^" << value.asString() << "'";
+        autocomplete = true;
+      }
+      // Component case
+      else {
+        mysqlQuery << " " << key.asString() << "='" << value.asString() << "'";
+      }
+      input = true;
+    }
+
+    if (!input) { // Force it to be the empty set
+      mysqlQuery << " limit 0";
+    }
+    mysqlQuery << ";";
+
+    // 4) Run the Query
+    // We're assuming that databaseHandler has already been connected to the database
+    std::shared_ptr<MYSQL_RES> results = atmos::util::PerformQuery(databaseHandler, mysqlQuery.str());
+
+    MYSQL_ROW row;
+    ndn::Name segmentPrefix(m_prefix);
+    segmentPrefix.append("query-results");
+    segmentPrefix.append(version);
+
+    size_t usedBytes = 0;
+    const size_t PAYLOAD_LIMIT = 7000;
+    uint64_t segmentNo = 0;
+    Json::Value array;
+    while ((row = mysql_fetch_row(results.get())))
+    {
+      size_t size = strlen(row[0]) + 1;
+      if (usedBytes + size > PAYLOAD_LIMIT) {
+        publishJson(face, keyChain, segmentPrefix, array, segmentNo, false, autocomplete);
+        array.clear();
+        usedBytes = 0;
+        segmentNo++;
+      }
+      array.append(row[0]);
+      usedBytes += size;
+    }
+    publishJson(face, keyChain, segmentPrefix, array, segmentNo, true, autocomplete);
+  }
+}
+
+} // namespace query
+} // namespace atmos
+#endif //ATMOS_QUERY_QUERY_ADAPTER_HPP
diff --git a/catalog/src/util/catalog-adapter.hpp b/catalog/src/util/catalog-adapter.hpp
new file mode 100644
index 0000000..52f21d2
--- /dev/null
+++ b/catalog/src/util/catalog-adapter.hpp
@@ -0,0 +1,184 @@
+/** NDN-Atmos: Cataloging Service for distributed data originally developed
+ *  for atmospheric science data
+ *  Copyright (C) 2015 Colorado State University
+ *
+ *  NDN-Atmos is free software: you can redistribute it and/or modify
+ *  it under the terms of the GNU General Public License as published by
+ *  the Free Software Foundation, either version 3 of the License, or
+ *  (at your option) any later version.
+ *
+ *  NDN-Atmos is distributed in the hope that it will be useful,
+ *  but WITHOUT ANY WARRANTY; without even the implied warranty of
+ *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ *  GNU General Public License for more details.
+ *
+ *  You should have received a copy of the GNU General Public License
+ *  along with NDN-Atmos.  If not, see <http://www.gnu.org/licenses/>.
+**/
+
+#ifndef ATMOS_UTIL_CATALOG_ADAPTER_HPP
+#define ATMOS_UTIL_CATALOG_ADAPTER_HPP
+
+#include <ndn-cxx/data.hpp>
+#include <ndn-cxx/face.hpp>
+#include <ndn-cxx/interest.hpp>
+#include <ndn-cxx/name.hpp>
+#include <ndn-cxx/security/key-chain.hpp>
+
+#include <memory>
+#include <string>
+
+
+#include <ndn-cxx/encoding/block.hpp>
+
+#include <iostream>
+
+namespace atmos {
+namespace util {
+
+/**
+ * Catalog Adapter acts as a common interface for Classes that need to register as Interest Filters
+ *
+ * Both QueryAdapter and PublisherAdapter use this as a template to allow consistancy between
+ * their designs and flow-control
+ */
+template <typename DatabaseHandler>
+class CatalogAdapter {
+public:
+  /**
+   * Constructor
+   * @param face:            Face that will be used for NDN communications
+   * @param keyChain:        KeyChain to sign query responses and evaluate the incoming publish
+   *                          and ChronoSync requests against
+   * @param databaseHandler: <typename DatabaseHandler> to the database that stores our catalog
+   * @oaram prefix:          Name that will define the prefix to all queries and publish requests
+   *                          that will be routed to this specific Catalog Instance
+   */
+  CatalogAdapter(std::shared_ptr<ndn::Face> face, std::shared_ptr<ndn::KeyChain> keyChain,
+          std::shared_ptr<DatabaseHandler> databaseHandler, const ndn::Name& prefix);
+
+  /**
+   * Destructor
+   */
+  virtual
+  ~CatalogAdapter();
+
+protected:
+  // @{ (onData and onTimeout) and/or onInterest should be overwritten at a minimum
+
+
+  /**
+   * Data that is routed to this class based on the Interest
+   *
+   * @param interest: Interest that caused this Data to be routed
+   * @param data:     Data that needs to be handled
+   */
+  virtual void
+  onData(const ndn::Interest& interest, const ndn::Data& data);
+
+  /**
+   * Timeout from a Data request
+   *
+   * @param interest: Interest that failed to be satisfied (within the timelimit)
+   */
+  virtual void
+  onTimeout(const ndn::Interest& interest);
+
+
+  /**
+   * Interest that is routed to this class based on the InterestFilter
+   *
+   * @param filter:   InterestFilter that caused this Interest to be routed
+   * @param interest: Interest that needs to be handled
+   */
+  virtual void
+  onInterest(const ndn::InterestFilter& filter, const ndn::Interest& interest);
+  // @}
+
+  /**
+   * Callback that should/can be used to evaluate that the Interest Filter has been correctly set up
+   *
+   * @param prefix: Name that will be routed to this class
+   */
+  virtual void
+  onRegisterSuccess(const ndn::Name& prefix);
+
+  /**
+   * Callback that should/can be used to evaluate that the Interest Filter has been correctly set up
+   *
+   * @param prefix: Name that failed to route
+   * @param reason: String explanation as to why the failure occured
+   */
+  virtual void
+  onRegisterFailure(const ndn::Name& prefix, const std::string& reason);
+
+
+  // Face to communicate with
+  std::shared_ptr<ndn::Face> m_face;
+  // KeyChain used for security
+  std::shared_ptr<ndn::KeyChain> m_keyChain;
+  // Handle to the Catalog's database
+  std::shared_ptr<DatabaseHandler> m_databaseHandler;
+  // Prefix for our namespace
+  ndn::Name m_prefix;
+}; // class CatalogAdapter
+
+template <typename DatabaseHandler>
+CatalogAdapter<DatabaseHandler>::CatalogAdapter(std::shared_ptr<ndn::Face> face,
+                                                std::shared_ptr<ndn::KeyChain> keyChain,
+                                                std::shared_ptr<DatabaseHandler> databaseHandler,
+                                                const ndn::Name& prefix)
+  : m_face(face), m_keyChain(keyChain), m_databaseHandler(databaseHandler), m_prefix(prefix)
+{
+  // empty
+}
+
+template <typename DatabaseHandler>
+CatalogAdapter<DatabaseHandler>::~CatalogAdapter()
+{
+  // empty
+}
+
+template <typename DatabaseHandler>
+void
+CatalogAdapter<DatabaseHandler>::onRegisterSuccess(const ndn::Name& prefix)
+{
+  // std::cout << "Successfully registered " << prefix << std::endl;
+}
+
+template <typename DatabaseHandler>
+void
+CatalogAdapter<DatabaseHandler>::onRegisterFailure(const ndn::Name& prefix, const std::string& reason)
+{
+  // std::cout << "Failed to register prefix " << prefix << ": " << reason << std::endl;
+}
+
+
+template <typename DatabaseHandler>
+void
+CatalogAdapter<DatabaseHandler>::onData(const ndn::Interest& interest, const ndn::Data& data)
+{
+  // At this point we need to get the ndn::Block out of data.getContent()
+}
+
+template <typename DatabaseHandler>
+void
+CatalogAdapter<DatabaseHandler>::onInterest(const ndn::InterestFilter& filter, const ndn::Interest& interest)
+{
+  // At this point we need to use the filter to either:
+  // a) Request the Data for the Interest, or
+  // b) Use the Filter to ID where in the Interest the Interest's "Content" is, and grab that out
+}
+
+
+template <typename DatabaseHandler>
+void
+CatalogAdapter<DatabaseHandler>::onTimeout(const ndn::Interest& interest)
+{
+  // At this point, probably should do a retry
+}
+
+} // namespace util
+} // namespace atmos
+
+#endif //ATMOS_UTIL_CATALOG_ADAPTER_HPP
diff --git a/catalog/src/util/mysql-util.cpp b/catalog/src/util/mysql-util.cpp
new file mode 100644
index 0000000..62225ba
--- /dev/null
+++ b/catalog/src/util/mysql-util.cpp
@@ -0,0 +1,70 @@
+/** NDN-Atmos: Cataloging Service for distributed data originally developed
+ *  for atmospheric science data
+ *  Copyright (C) 2015 Colorado State University
+ *
+ *  NDN-Atmos is free software: you can redistribute it and/or modify
+ *  it under the terms of the GNU General Public License as published by
+ *  the Free Software Foundation, either version 3 of the License, or
+ *  (at your option) any later version.
+ *
+ *  NDN-Atmos is distributed in the hope that it will be useful,
+ *  but WITHOUT ANY WARRANTY; without even the implied warranty of
+ *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ *  GNU General Public License for more details.
+ *
+ *  You should have received a copy of the GNU General Public License
+ *  along with NDN-Atmos.  If not, see <http://www.gnu.org/licenses/>.
+**/
+
+#include "util/mysql-util.hpp"
+
+#include "mysql/errmsg.h"
+
+namespace atmos {
+namespace util {
+
+ConnectionDetails::ConnectionDetails(const std::string& serverInput, const std::string& userInput,
+                                     const std::string& passwordInput, const std::string& databaseInput)
+  : server(serverInput), user(userInput), password(passwordInput), database(databaseInput)
+{
+  // empty
+}
+
+
+std::shared_ptr<MYSQL>
+MySQLConnectionSetup(ConnectionDetails& details) {
+  MYSQL* conn = mysql_init(NULL);
+  mysql_real_connect(conn, details.server.c_str(), details.user.c_str(),
+                     details.password.c_str(), details.database.c_str(), 0, NULL, 0);
+  std::shared_ptr<MYSQL> connection(conn);
+  return connection;
+}
+
+std::shared_ptr<MYSQL_RES>
+PerformQuery(std::shared_ptr<MYSQL> connection, const std::string& sql_query) {
+  std::shared_ptr<MYSQL_RES> result(NULL);
+
+  switch (mysql_query(connection.get(), sql_query.c_str()))
+  {
+    case 0:
+    {
+      MYSQL_RES* resultPtr = mysql_store_result(connection.get());
+      if (resultPtr != NULL)
+      {
+        result.reset(resultPtr);
+      }
+      break;
+    }
+    // Various error cases
+    case CR_COMMANDS_OUT_OF_SYNC:
+    case CR_SERVER_GONE_ERROR:
+    case CR_SERVER_LOST:
+    case CR_UNKNOWN_ERROR:
+    default:
+      break;
+  }
+  return result;
+}
+
+} // namespace util
+} // namespace atmos
diff --git a/catalog/src/util/mysql-util.hpp b/catalog/src/util/mysql-util.hpp
new file mode 100644
index 0000000..da3c0b5
--- /dev/null
+++ b/catalog/src/util/mysql-util.hpp
@@ -0,0 +1,48 @@
+/** NDN-Atmos: Cataloging Service for distributed data originally developed
+ *  for atmospheric science data
+ *  Copyright (C) 2015 Colorado State University
+ *
+ *  NDN-Atmos is free software: you can redistribute it and/or modify
+ *  it under the terms of the GNU General Public License as published by
+ *  the Free Software Foundation, either version 3 of the License, or
+ *  (at your option) any later version.
+ *
+ *  NDN-Atmos is distributed in the hope that it will be useful,
+ *  but WITHOUT ANY WARRANTY; without even the implied warranty of
+ *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ *  GNU General Public License for more details.
+ *
+ *  You should have received a copy of the GNU General Public License
+ *  along with NDN-Atmos.  If not, see <http://www.gnu.org/licenses/>.
+**/
+
+#ifndef ATMOS_UTIL_CONNECTION_DETAILS_HPP
+#define ATMOS_UTIL_CONNECTION_DETAILS_HPP
+
+#include "mysql/mysql.h"
+
+#include <memory>
+#include <string>
+
+namespace atmos {
+namespace util {
+struct ConnectionDetails {
+public:
+  std::string server;
+  std::string user;
+  std::string password;
+  std::string database;
+
+  ConnectionDetails(const std::string& serverInput, const std::string& userInput,
+                    const std::string& passwordInput, const std::string& databaseInput);
+};
+
+std::shared_ptr<MYSQL>
+MySQLConnectionSetup(ConnectionDetails& details);
+
+std::shared_ptr<MYSQL_RES>
+PerformQuery(std::shared_ptr<MYSQL> connection, const std::string& sql_query);
+
+} // namespace util
+} // namespace atmos
+#endif //ATMOS_UTIL_CONNECTION_DETAILS_HPP
diff --git a/catalog/tests/unit-tests/simple.cpp b/catalog/tests/unit-tests/simple.cpp
index 970b835..5dda75a 100644
--- a/catalog/tests/unit-tests/simple.cpp
+++ b/catalog/tests/unit-tests/simple.cpp
@@ -1,32 +1,30 @@
-/* -*- Mode:C++; c-file-style:"gnu"; indent-tabs-mode:nil; -*- */
-/**
- * Copyright (c) 2015,  Colorado State University.
+/** NDN-Atmos: Cataloging Service for distributed data originally developed
+ *  for atmospheric science data
+ *  Copyright (C) 2015 Colorado State University
  *
- * This file is part of ndn-atmos.
+ *  NDN-Atmos is free software: you can redistribute it and/or modify
+ *  it under the terms of the GNU General Public License as published by
+ *  the Free Software Foundation, either version 3 of the License, or
+ *  (at your option) any later version.
  *
- * ndn-atmos is free software: you can redistribute it and/or modify it under the
- * terms of the GNU Lesser General Public License as published by the Free Software
- * Foundation, either version 3 of the License, or (at your option) any later version.
+ *  NDN-Atmos is distributed in the hope that it will be useful,
+ *  but WITHOUT ANY WARRANTY; without even the implied warranty of
+ *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ *  GNU General Public License for more details.
  *
- * ndn-atmos is distributed in the hope that it will be useful, but WITHOUT ANY
- * WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A
- * PARTICULAR PURPOSE.  See the GNU Lesser General Public License for more details.
- *
- * You should have received copies of the GNU General Public License and GNU Lesser
- * General Public License along with ndn-atmos, e.g., in COPYING.md file.  If not, see
- * <http://www.gnu.org/licenses/>.
- *
- * See AUTHORS.md for complete list of ndn-atmos authors and contributors.
- */
+ *  You should have received a copy of the GNU General Public License
+ *  along with this program.  If not, see <http://www.gnu.org/licenses/>.
+**/
 
 #include <boost/test/unit_test.hpp>
+
 #include <json/value.h>
 #include <json/writer.h>
 #include <json/reader.h>
-#include <mysql.h>
+
 #include <iostream>
 
-namespace NdnAtmos {
+namespace atmos {
 namespace test {
 
 BOOST_AUTO_TEST_SUITE(MasterSuite)
@@ -36,12 +34,6 @@
   BOOST_CHECK(0==0);
 }
 
-BOOST_AUTO_TEST_CASE(DBTest)
-{
-  MYSQL *conn = mysql_init(NULL);
-  BOOST_CHECK_EQUAL(conn == NULL, false);
-}
-
 BOOST_AUTO_TEST_CASE(JsonTest)
 {
   Json::Value original;
@@ -62,4 +54,4 @@
 BOOST_AUTO_TEST_SUITE_END()
 
 } //namespace test
-} //namespace ndn-atmos
+} //namespace atmos