File name format change and Removed warning messages (Except warning from boost for Logging)

Change-Id: If3a3a5411d377d925527fc3e8809c228a9a81e26
diff --git a/src/sequencing-manager.cpp b/src/sequencing-manager.cpp
new file mode 100644
index 0000000..9a5ec89
--- /dev/null
+++ b/src/sequencing-manager.cpp
@@ -0,0 +1,96 @@
+#include <string>
+#include <iostream>
+#include <fstream>
+#include <pwd.h>
+#include <cstdlib>
+#include <unistd.h>
+
+#include "sequencing-manager.hpp"
+
+namespace nlsr {
+
+using namespace std;
+
+void
+SequencingManager::splittSequenceNo(uint64_t seqNo)
+{
+  m_combinedSeqNo = seqNo;
+  m_adjLsaSeq = (m_combinedSeqNo & 0xFFFFF);
+  m_corLsaSeq = ((m_combinedSeqNo >> 20) & 0xFFFFF);
+  m_nameLsaSeq = ((m_combinedSeqNo >> 40) & 0xFFFFF);
+}
+
+void
+SequencingManager::combineSequenceNo()
+{
+  m_combinedSeqNo = 0;
+  m_combinedSeqNo = m_combinedSeqNo | m_adjLsaSeq;
+  m_combinedSeqNo = m_combinedSeqNo | (m_corLsaSeq << 20);
+  m_combinedSeqNo = m_combinedSeqNo | (m_nameLsaSeq << 40);
+}
+
+void
+SequencingManager::writeSeqNoToFile()
+{
+  std::ofstream outputFile(m_seqFileNameWithPath.c_str(), ios::binary);
+  outputFile << m_combinedSeqNo;
+  outputFile.close();
+}
+
+void
+SequencingManager::initiateSeqNoFromFile()
+{
+  cout << "Seq File Name: " << m_seqFileNameWithPath << endl;
+  std::ifstream inputFile(m_seqFileNameWithPath.c_str(), ios::binary);
+  if (inputFile.good())
+  {
+    inputFile >> m_combinedSeqNo;
+    splittSequenceNo(m_combinedSeqNo);
+    m_adjLsaSeq += 10;
+    m_corLsaSeq += 10;
+    m_nameLsaSeq += 10;
+    combineSequenceNo();
+    inputFile.close();
+  }
+  else
+  {
+    splittSequenceNo(0);
+  }
+}
+
+void
+SequencingManager::setSeqFileName(string filePath)
+{
+  m_seqFileNameWithPath = filePath;
+  if (m_seqFileNameWithPath.empty())
+  {
+    m_seqFileNameWithPath = getUserHomeDirectory();
+  }
+  m_seqFileNameWithPath = m_seqFileNameWithPath + "/nlsrSeqNo.txt";
+}
+
+string
+SequencingManager::getUserHomeDirectory()
+{
+  string homeDirPath(getpwuid(getuid())->pw_dir);
+  if (homeDirPath.empty())
+  {
+    homeDirPath = getenv("HOME");
+  }
+  return homeDirPath;
+}
+
+ostream&
+operator<<(ostream& os, const SequencingManager& sm)
+{
+  std::cout << "----SequencingManager----" << std::endl;
+  std::cout << "Adj LSA seq no: " << sm.getAdjLsaSeq() << endl;
+  std::cout << "Cor LSA Seq no: " << sm.getCorLsaSeq() << endl;
+  std::cout << "Name LSA Seq no: " << sm.getNameLsaSeq() << endl;
+  std::cout << "Combined LSDB Seq no: " << sm.getCombinedSeqNo() << endl;
+  return os;
+}
+
+}//namespace nlsr
+
+